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View Structure Prediction Details

Protein: swi5
Organism: Schizosaccharomyces pombe
Length: 85 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for swi5.

Description E-value Query
Range
Subject
Range
gi|114188860, gi... - gi|115438356|ref|XP_001218045.1| predicted protein [Aspergillus terreus NIH2624], gi|114188860|gb|EA...
57.0 [0..6] [81..28]
gi|238503498, gi... - gi|238503498|ref|XP_002382982.1| DNA repair protein Swi5/Sae3, putative [Aspergillus flavus NRRL3357...
gi|169765205 - gi|169765205|ref|XP_001817074.1| hypothetical protein [Aspergillus oryzae RIB40]
gi|83764928 - gi|83764928|dbj|BAE55072.1| unnamed protein product [Aspergillus oryzae]
56.0 [0..4] [81..31]
gi|159126242 - gi|159126242|gb|EDP51358.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
gi|70998604, gi|... - gi|70998604|ref|XP_754024.1| DNA repair protein Swi5/Sae3 [Aspergillus fumigatus Af293], gi|66851660...
54.0 [0..13] [81..43]
gi|119181787, gi... - gi|90300863|gb|EAS30494.1| predicted protein [Coccidioides immitis RS], gi|119181787|ref|XP_00124207...
51.0 [0..6] [85..52]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSQLESRV HLLEQQKEQL ESSLQDALAK LKNRDAKQTV QKHIDLLHTY NEIRDIALGM  60
   61 IGKVAEHEKC TSVELFDRFG VNGSE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 41.920819
Match: PF07061.2
Description: No description for PF07061.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.867 N/A N/A a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.864 N/A N/A a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.862 N/A N/A a.237.1 Description not found.
View Download 0.813 N/A N/A a.118.11 Cytochrome c oxidase subunit E
View Download 0.807 N/A N/A a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.801 N/A N/A a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.781 N/A N/A a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.776 N/A N/A a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.681 N/A N/A a.4.12 TrpR-like
View Download 0.594 N/A N/A d.54.1 Enolase N-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle