YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC17G9.12c
Organism:	Schizosaccharomyces pombe
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC17G9.12c.

Description	E-value	Query Range	Subject Range
gi\|67922986, gi\|... - gi\|67922986\|ref\|ZP_00516480.1\| Calcium-translocating P-type ATPase, PMCA-type [Crocosphaera watsonii...	182.0	[0..13]	[272..506]
gi\|7436358 - pir\|\|S77052 cation-transporting ATPase (EC 3.6.1.-) pacL-1 - Synechocystis sp. (strain PCC 6803) gi\|16331945, gi\|... - gi\|16331945\|ref\|NP_442673.1\| cation-transporting ATPase; E1-E2 ATPase [Synechocystis sp. PCC 6803], ...	179.0	[0..13]	[272..501]
gi\|22294948, gi\|... - gi\|22298767\|ref\|NP_682014.1\| cation-transporting ATPase PacL-like protein [Thermosynechococcus elong...	176.0	[0..13]	[272..491]
gi\|53687582 - gi\|53687582\|ref\|ZP_00108024.2\| COG0474: Cation transport ATPase [Nostoc punctiforme PCC 73102]	173.0	[0..13]	[272..92]
gi\|53765674, gi\|... - gi\|75909598\|ref\|YP_323894.1\| ATPase, E1-E2 type [Anabaena variabilis ATCC 29413], gi\|75703323\|gb\|ABA...	172.0	[0..13]	[272..508]
gi\|17132470, gi\|... - gi\|17230867\|ref\|NP_487415.1\| cation-transporting ATPase [Nostoc sp. PCC 7120], gi\|17132470\|dbj\|BAB75... gi\|25290696 - pir\|\|AH2227 cation-transporting ATPase all3375 [imported] - Nostoc sp. (strain PCC 7120)	171.0	[0..13]	[272..512]
gi\|86554856, gi\|... - gi\|86606314\|ref\|YP_475077.1\| calcium-translocating P-type ATPase, PMCA-type [Synechococcus sp. JA-3-... gi\|86606314 - gi\|86606314\|ref\|YP_475077.1\| calcium-translocating P-type ATPase, PMCA-type [Cyanobacteria bacterium...	169.0	[0..13]	[272..486]
gi\|53802673, gi\|... - gi\|53802673\|ref\|YP_112634.1\| cation transporter E1-E2 family ATPase [Methylococcus capsulatus str. B...	169.0	[0..51]	[272..470]
gi\|86557645, gi\|... - gi\|86609103\|ref\|YP_477865.1\| calcium-translocating P-type ATPase, PMCA-type [Synechococcus sp. JA-2-... gi\|86609103 - gi\|86609103\|ref\|YP_477865.1\| calcium-translocating P-type ATPase, PMCA-type [Cyanobacteria bacterium...	168.0	[0..13]	[272..497]
gi\|20092875, gi\|... - gi\|20092875\|ref\|NP_618950.1\| cation-transporting ATPase [Methanosarcina acetivorans C2A], gi\|1991818...	168.0	[0..14]	[272..469]

Back

Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYIVDFDET ITTYDTIHLL AEAVNKPEEW SVISDKYWQE YLAWREALPH STTLTSYLPL  60
   61 LGGSRYLEEA SIKRIEKSQY FSGLSEGALD NIVQLITLRA GFVEFINALV PDLRVSKTIF 120
  121 HVLSVNWSAR VIEQTLLHHT DLTADLLCVH ANDFDFDTST NTTNGRILAR NASSLLMNST 180
  181 DKVREFRRIV QTDAVSSPLN VVYIGDSPTD FGCLQISPIS ILMRSNQKYY DILSRFEDVQ 240
  241 LVDISEFPVQ KAVPGKKIIY TCSDWCAIQK AFLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.30103
Match:	1iwoA
Description:	Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits