YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1952.08c
Organism:	Schizosaccharomyces pombe
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1952.08c.

Description	E-value	Query Range	Subject Range
gi\|85074725 - gi\|85074725\|ref\|XP_965730.1\| hypothetical protein NCU00590 [Neurospora crassa OR74A] gi\|32408577, gi\|... - gi\|38567317\|emb\|CAE76605.1\| conserved hypothetical protein [Neurospora crassa], gi\|32408577\|ref\|XP_3...	259.0	[0..5]	[188..18]
gi\|2598190, gi\|2... - gi\|2598190\|gb\|AAB84003.1\| unknown [Cochliobolus heterostrophus], gi\|2583216\|gb\|AAB82944.1\| unknown [...	256.0	[0..25]	[185..4]
gi\|46128623, gi\|... - gi\|46128623\|ref\|XP_388865.1\| hypothetical protein FG08689.1 [Gibberella zeae PH-1], gi\|42549436\|gb\|E...	238.0	[0..8]	[186..20]
gi\|4928176 - gi\|4928176\|gb\|AAD33446.1\|AF129745_1 unknown [Cochliobolus cymbopogonis]	229.0	[0..40]	[186..1]
gi\|88182101, gi\|... - gi\|88182101\|gb\|EAQ89569.1\| hypothetical protein CHGG_06188 [Chaetomium globosum CBS 148.51], gi\|1161...	228.0	[0..5]	[186..19]
gi\|34328640 - gi\|34328640\|gb\|AAO31741.1\| unknown [Phaeosphaeria nodorum]	223.0	[0..40]	[188..1]
gi\|169595274, gi... - gi\|169595274\|ref\|XP_001791061.1\| hypothetical protein SNOG_00374 [Phaeosphaeria nodorum SN15], gi\|11...	221.0	[0..1]	[151..1]
gi\|30171180 - gi\|30171180\|gb\|AAO37756.1\| unknown [Leptosphaeria maculans]	221.0	[0..40]	[189..1]
gi\|86197051, gi\|... - gi\|86197051\|gb\|EAQ71689.1\| hypothetical protein MGCH7_ch7g1096 [Magnaporthe grisea 70-15], gi\|149211...	220.0	[0..6]	[187..18]

Back

Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKVDSSHE FPSQIKRCLS SSKYIQLATC FHDQPHSSLM TFTYLPAGSA APYEVEDCII  60
   61 LSTGENSKKY FNISSNPRVS LLVHDWTTNR QETD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.09691
Match:	1rfeA
Description:	Crystal structure of conserved hypothetical protein Rv2991 from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [95-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDASSLYTLL YKMNQAQFSN TSVTLNGLAT VLPKNSKEEE FFREKHLNTN DKGNTKQYVE  60
   61 GEDMRIIKIK LESARICDQR LNNVQKWNAR GDETPF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits