YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC428.06c
Organism:	Schizosaccharomyces pombe
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC428.06c.

Description	E-value	Query Range	Subject Range
gi\|46128469, gi\|... - gi\|46128469\|ref\|XP_388788.1\| hypothetical protein FG08612.1 [Gibberella zeae PH-1], gi\|42549797\|gb\|E...	238.0	[0..4]	[163..173]
gi\|32410707, gi\|... - gi\|32410707\|ref\|XP_325834.1\| predicted protein [Neurospora crassa], gi\|28920009\|gb\|EAA29396.1\| predi... gi\|85090885 - gi\|85090885\|ref\|XP_958632.1\| hypothetical protein NCU05979 [Neurospora crassa OR74A]	226.0	[0..6]	[163..11]
gi\|40746049, gi\|... - gi\|67521836\|ref\|XP_658979.1\| hypothetical protein AN1375.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	210.0	[0..5]	[163..9]
gi\|159131029 - gi\|159131029\|gb\|EDP56142.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|66849908, gi\|... - gi\|70995014\|ref\|XP_752273.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668499...	188.0	[0..5]	[163..9]
gi\|169768106 - gi\|169768106\|ref\|XP_001818524.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238485057, gi... - gi\|238485057\|ref\|XP_002373767.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22... gi\|83766379 - gi\|83766379\|dbj\|BAE56522.1\| unnamed protein product [Aspergillus oryzae]	179.0	[0..5]	[163..9]
gi\|44982298, gi\|... - gi\|45187560\|ref\|NP_983783.1\| ADL313Wp [Ashbya gossypii ATCC 10895], gi\|44982298\|gb\|AAS51607.1\| ADL31... gi\|44982298 - gi\|44982298\|gb\|AAS51607.1\| ADL313Wp [Ashbya gossypii ATCC 10895]	173.0	[0..27]	[169..47]
orf19.4615, orf1... - orf19.4615 CGDID:CAL0003615 Assembly 19, Contig19-10212 (99496, 100452) CDS, translated using codon ... gi\|46444833, gi\|... - gi\|68466410\|ref\|XP_722687.1\| hypothetical protein CaO19.4615 [Candida albicans SC5314], gi\|68466117\|...	151.0	[0..6]	[159..8]
RXT2 - Subunit of the histone deacetylase Rpd3L complex; possibly involved in cell fusion and invasive grow...	151.0	[0..33]	[160..85]
gi\|38102551, gi\|... - gi\|39973637\|ref\|XP_368209.1\| hypothetical protein MG01035.4 [Magnaporthe grisea 70-15], gb\|EAA49377....	146.0	[0..66]	[162..5]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQFEEQIER FKQALFEDSD ASDSDSSIGE ALTNRGLKRK KGSKNVYYGC VGNSSGSSID  60
   61 IDVCYYNIGN TKRGVVSHFR RRIDPEWLDH DNPYNDINIA EIMSPLTKPQ DLLTHPAISS 120
  121 IFEQNYLSIL ASSALEIISA EHKYTAHLEQ LMVALLGDDP SLP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	65.065502
Match:	PF08595.2
Description:	No description for PF08595.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [164-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPPHEVFGIS PEQCRELTIT VQEALEKSKE FIRCWTNVRM DLLRAIRFKN KVIAYCQGED  60
   61 YNGNTQVLSK NESDGKPNS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.956	d.47.1	Ribosomal protein L11, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits