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View Structure Prediction Details

Protein: cog2
Organism: Schizosaccharomyces pombe
Length: 191 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cog2.

Description E-value Query
Range
Subject
Range
cogc-2 - status:Confirmed UniProt:Q21444 protein_id:AAB03139.2
180.0 [0..11] [163..20]
gi|114573120 - gi|114573120|ref|XP_001147997.1| PREDICTED: component of oligomeric golgi complex 2 isoform 1 [Pan t...
177.0 [0..15] [167..15]
gi|123997539, gi... - gi|157929002|gb|ABW03786.1| component of oligomeric golgi complex 2 [synthetic construct], gi|123997...
COG2 - component of oligomeric golgi complex 2
176.0 [0..15] [167..15]
gi|187039104, gi... - gi|39585208|emb|CAE57451.1| Hypothetical protein CBG00414 [Caenorhabditis briggsae], gi|187039104|em...
gi|157754265 - gi|157754265|ref|XP_001669476.1| Hypothetical protein CBG00414 [Caenorhabditis briggsae AF16]
173.0 [0..11] [164..19]
gi|109508194, gi... - gi|109509044|ref|XP_001053407.1| PREDICTED: similar to component of oligomeric golgi complex 2 isofo...
173.0 [0..15] [167..15]
gi|116003899, gi... - gi|116003899|ref|NP_001070307.1| hypothetical protein LOC512213 [Bos taurus], gi|115304786|gb|AAI234...
173.0 [0..15] [167..15]
gi|74178852 - gi|74178852|dbj|BAE34057.1| unnamed protein product [Mus musculus]
173.0 [0..15] [167..15]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKDADSGS DLVDAFLSDA YLNTEELRKD GPFSPDEFLV SKRFLGLDGL VNELSRLFEQ  60
   61 VNNELMLLVK DNYQDFVHLG SRMKSGNTKV STLISSIHRS EEQLKNSKQS LIGHSTEIQN 120
  121 NLKHKQDVEN EKLIASNLLL LDQILKFLKS NDSSHPLWLE SLNNAQRLCD TYKDHPWVQS 180
  181 ISPTLINYIK H

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.22
Match: 1m1jC
Description: Fibrinogen C-terminal domains; Fibrinogen gamma chain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle