YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC3C7.07c
Organism:	Schizosaccharomyces pombe
Length:	361 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3C7.07c.

Description	E-value	Query Range	Subject Range
gi\|28917547, gi\|... - gi\|32415525\|ref\|XP_328242.1\| hypothetical protein [Neurospora crassa], gi\|28917547\|gb\|EAA27245.1\| co... gi\|85080110 - gi\|85080110\|ref\|XP_956481.1\| hypothetical protein NCU01803 [Neurospora crassa OR74A]	395.0	[0..6]	[357..34]
gi\|42551488, gi\|... - gi\|46138727\|ref\|XP_391054.1\| hypothetical protein FG10878.1 [Gibberella zeae PH-1], gi\|42551488\|gb\|E...	345.0	[0..26]	[357..1]
gi\|38109105, gi\|... - gi\|39977593\|ref\|XP_370184.1\| hypothetical protein MGG_06681 [Magnaporthe grisea 70-15], gb\|EAA55024....	339.0	[0..50]	[357..17]
gi\|67540160, gi\|... - gi\|67540160\|ref\|XP_663854.1\| hypothetical protein AN6250.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	318.0	[0..22]	[359..30]
gi\|116199443, gi... - gi\|88179156\|gb\|EAQ86624.1\| hypothetical protein CHGG_07877 [Chaetomium globosum CBS 148.51], gi\|1161...	308.0	[0..34]	[357..5]
gi\|66853277, gi\|... - gi\|71001916\|ref\|XP_755639.1\| arginine-tRNA-protein transferase 1 [Aspergillus fumigatus Af293], gi\|6...	299.0	[0..8]	[315..16]
gi\|69145629, gi\|... - gi\|71274127\|ref\|NP_001025066.1\| arginyltransferase 1 isoform 3 [Mus musculus], gi\|69145629\|gb\|AAZ034...	295.0	[0..44]	[300..199]
gi\|171097 - gi\|171097\|gb\|AAA34439.1\| arginyl-tRNA-protein transferase (ATE1) (EC 2.3.2.8)	294.0	[0..2]	[287..61]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLDKLLYTG YNRLIDLGWR RSGHYLYKPN GKTSCCSLYT IRLDSYNFKI AKEQKKAIKK  60
   61 WVKYVNGKPL KPMKSEI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.886057
Match:	PF04376.4
Description:	No description for PF04376.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STDYLNNAFQ TIESLGAEKY SVTMEPCTYT DEKFEVFKKY QMQVHLEKEE EITKKGFSRF  60
   61 LCNSPLFNED KGIKYGSYHQ MYRFQGRLVA VGVLDLLPHG VSSVYLFYDP DMSKFSLGRI 120
  121 SACREIWLAL ECGYRYYYMG YYIHTCPKMK YKATYSPSYL LNPGTNKWIP IENFTSLWN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	90.853872
Match:	PF04377.6
Description:	No description for PF04377.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [257-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGAPKYISFG DENNSDIQTA VDYDSSEDSS QNEDDYTLFN RQLPGILSVN VAESLVSENF  60
   61 ANIGNSTFPT RHVLSYFPQV KHWFVEINAA VGEEVAKSYT LVLSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits