YRC Public Data Repository - Protein Structure Prediction

Protein:	rna14
Organism:	Schizosaccharomyces pombe
Length:	733 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rna14.

Description	E-value	Query Range	Subject Range
gi\|113475191, gi... - gi\|113475191\|ref\|YP_721252.1\| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...	323.0	[0..1]	[662..7]
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	323.0	[0..19]	[629..304]
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	308.0	[0..28]	[621..460]
gi\|118385554 - gi\|118385554\|ref\|XP_001025906.1\| TPR Domain containing protein [Tetrahymena thermophila] gi\|89307673, gi\|... - gi\|89307673\|gb\|EAS05661.1\| TPR Domain containing protein [Tetrahymena thermophila SB210], gi\|1183855...	306.0	[0..20]	[641..423]
gi\|110552556, gi... - gi\|110603348\|ref\|ZP_01391425.1\| Tetratricopeptide TPR_1:Tetratricopeptide TPR_3:Tetratricopeptide TP...	275.0	[0..35]	[613..64]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	272.0	[0..40]	[538..24]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSDDNVEAD ASSNIIKDSP KIKEQENTST VNESDVLATS TTASSGVKRK RLPNDLVGQL  60
   61 RDKIQENPND ISSWYALVEE YGSKGKHEEL RETYEQMLRP FPYVPRVWVD YISSELAFND 120
  121 FHAVELLFSR CLVKVLSVDL WTLYLSYIRR INPDGEGQSR STITQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.09691
Match:	2ooeA
Description:	No description for 2ooeA was found.

Predicted Domain #2

Region A:
Residues: [166-733]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYEFVINTIG VDILSGPIWS EFVDFLRSGP ANSTWEQQQK LDHVRRIYQR AITTPIHNIE  60
   61 KLWRDYDAFE NSVNRATARK FVAEKSPVYM AARAAMRELS NLTEGLRVYD FTFERKYTKV 120
  121 ERIAYSRWMN WIKWEQSDPL DLQHGTMLQN RIAYAFEQAM LYVPLCPQIW LDGFSYFLSI 180
  181 SDEQRALQTI RRGMRYCPSN FVLHVRYAEH EEANNRTSEI RSTYESLIAA LAREISQLDS 240
  241 KASSSSESST DGNPQEKKLP EHLVKRKSRL VRQYSLAWCC LINAIRRTEG VKAARAIFTK 300
  301 ARKAPYQSHE IYIASAMMEH HCSRDPVIAS RIFELGMRHF GDVPAYVYKY LSYLIAINDE 360
  361 TNARALFEKA IPRIAADEAK PIYQKWLDYE SNYGDLNAAI ALSQRMAVVY PQESTQAIFL 420
  421 SRYGLKDDAE EEERETKEAE KIRELSVRLN GGNGFPGHVH NNREDDEVSI ASTSSKSNVE 480
  481 MEDTRLLPAS LELANTQGAS NPPTSALPTV PVPLPSIITE FLDELPAPQV ITGPRIQPTK 540
  541 LIDHIIKSDI PFIRLRNANA HLKRARFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1xi4A
Description:	Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits