YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC16A3.08c
Organism:	Schizosaccharomyces pombe
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16A3.08c.

Description	E-value	Query Range	Subject Range
gi\|40745624, gi\|... - gi\|67522407\|ref\|XP_659264.1\| hypothetical protein AN1660.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	312.0	[0..16]	[272..1238]
gi\|1749424, gi\|7... - pir\|\|T42085 MPT4 protein homolog - fission yeast (Schizosaccharomyces pombe) (fragment), gi\|1749424...	311.0	[0..1]	[284..4]
gi\|25504455, gi\|... - pir\|\|JC7700 38K ribosome-associated protein, Ray38p - yeast (Candida maltosa), gi\|13928591\|dbj\|BAB4...	152.0	[0..1]	[216..1]
gi\|44985716 - gi\|44985716\|gb\|AAS54340.1\| AGL151Wp [Ashbya gossypii ATCC 10895] gi\|45200946, gi\|... - gi\|45200946\|ref\|NP_986516.1\| AGL151Wp [Ashbya gossypii ATCC 10895], gi\|44985716\|gb\|AAS54340.1\| AGL15...	114.0	[0..7]	[224..3]
gi\|710338 - gi\|710338\|gb\|AAA70169.1\| G4p2	109.0	[0..7]	[143..3]
gi\|49525031, gi\|... - gi\|50286593\|ref\|XP_445725.1\| unnamed protein product [Candida glabrata], gi\|49525031\|emb\|CAG58644.1\|... gi\|49525031 - gi\|49525031\|emb\|CAG58644.1\| unnamed protein product [Candida glabrata]	89.0	[0..7]	[169..3]
gi\|49653051 - gi\|49653051\|emb\|CAG85390.1\| DEHA2B09988p [Debaryomyces hansenii] gi\|50414254, gi\|... - gi\|50414254\|ref\|XP_457386.1\| hypothetical protein DEHA0B10208g [Debaryomyces hansenii CBS767], gi\|49...	82.0	[0..1]	[263..1]
gi\|114193363, gi... - gi\|115396310\|ref\|XP_001213794.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114193363\|gb\|EA...	65.0	[0..43]	[236..47]
gi\|59717620, gi\|... - gi\|59800725\|ref\|YP_207437.1\| IgA-specific metalloendopeptidase [Neisseria gonorrhoeae FA 1090], gi\|5...	60.0	[0..38]	[272..986]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVASKNLFD LLGEETPAAT TTEKKTAASR DKKRSDSPPV PRELVAQSTT SRKRDPNQPT  60
   61 PRERTVNKKA DQPRRRRQAP QGNEAFAREG KEARANNAAH PVDATGAPSN RRNARARRGR 120
  121 EFDRHSQTGR VDTKKATERG WGDLVNSAAN P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [152-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVAENEGNTP SGAQTPAAEE ENVKTLDEYL SERKSAAKPV GRTVEKLENA TKVEKSAPEE  60
   61 LFASLKKSAS QKKSAAKESK PKKVLLDIEQ TFTARPARGG RPNRAPRRGP SETASKTQQA 120
  121 PPTLSETDFP ALA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits