YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC6F6.12
Organism:	Schizosaccharomyces pombe
Length:	401 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC6F6.12.

Description	E-value	Query Range	Subject Range
gi\|114194752, gi... - gi\|115389702\|ref\|XP_001212356.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	212.0	[0..17]	[399..71]
gi\|50762013 - gi\|50762013\|ref\|XP_424910.1\| PREDICTED: similar to RIKEN cDNA 4732481H14 [Gallus gallus]	208.0	[0..6]	[399..354]
SNX4_ASPFU - Sorting nexin-4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=... SNX4_ASPFU - Sorting nexin-4 OS=Aspergillus fumigatus GN=snx4 PE=3 SV=1	207.0	[0..18]	[400..73]
gi\|83764627 - gi\|83764627\|dbj\|BAE54771.1\| unnamed protein product [Aspergillus oryzae] gi\|169764603 - gi\|169764603\|ref\|XP_001816773.1\| hypothetical protein [Aspergillus oryzae RIB40]	202.0	[0..18]	[400..72]
gi\|88186239, gi\|... - gi\|88186239\|gb\|EAQ93707.1\| hypothetical protein CHGG_01942 [Chaetomium globosum CBS 148.51], gi\|1161...	202.0	[0..17]	[400..63]
SNX4_EMENI - Sorting nexin-4 OS=Emericella nidulans GN=snx4 PE=3 SV=1 SNX4_EMENI - Sorting nexin-4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) ...	202.0	[0..18]	[400..71]
SNX4_NEUCR - Sorting nexin-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC ... SNX4_NEUCR - Sorting nexin-4 OS=Neurospora crassa GN=snx-4 PE=3 SV=1	200.0	[0..8]	[400..59]
gi\|119192492, gi... - gi\|90305638\|gb\|EAS35269.1\| hypothetical protein CIMG_00623 [Coccidioides immitis RS], gi\|119192492\|r...	197.0	[0..17]	[399..69]
gi\|113420892 - gi\|113420892\|ref\|XP_376902.4\| PREDICTED: similar to sorting nexin family member 30 isoform 1 [Homo s...	194.0	[0..6]	[399..244]
gi\|16944415 - gi\|16944415\|emb\|CAC28769.2\| related to VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS5 [Neurospora ... gi\|157071371, gi... - gi\|164426527\|ref\|XP_961293.2\| hypothetical protein NCU04137 [Neurospora crassa OR74A], gi\|157071371\|...	189.0	[0..1]	[397..163]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSVNLDEP STNSTHFLQC LVTEPRKELQ GSRDTHVSYL IITKTNLSIF TRAECKVRRR  60
   61 FSDFVKLQEI LSRM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.42
Match:	1ocsA
Description:	Crystal structure of the yeast PX-doamin protein Grd19p (sorting nexin3) complexed to phosphatidylinosytol-3-phosphate.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [75-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEDCVVPPLP AKHKLEYIKG GRFSDNFINR RAKLLNRYIT RCALHPVLHQ SPHFIAFLEN  60
   61 PNWNNYVRFF IQPKLNNTSK LDEISDSLLN AFSKLKEEPT EFDIQRDHVQ QFMFGISNLE 120
  121 GSIQKLLRLE KALESDYEDV SIQFDRLASL DQALDVPIES IQNALQQTGT EYANLTEKLT 180
  181 LLLDTIKDVE SYAHSLKELL KRRDQKQQDV EALQEYSAKL SLERDKISSG GSNGFSLSKT 240
  241 LDDLRGIDHN DTRLKRLEHV QSELQAVEQA IQEASAVHDA FNQRVREESK LFDSVRQSEM 300
  301 LSAISDYANV HVEFFTNIRD LWIRVKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.045757
Match:	2dfsA
Description:	No description for 2dfsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits