YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: cwf28
Organism: Schizosaccharomyces pombe
Length: 381 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cwf28.

Description E-value Query
Range
Subject
Range
GPKOW - G patch domain and KOW motifs
gi|15811782 - ref|NP_056513.2| G patch domain and KOW motifs [Homo sapiens]
324.0 [0..65] [381..29]
gi|62089558 - gi|62089558|gb|AAH92224.1| Gpkow protein [Mus musculus]
309.0 [0..17] [381..34]
gi|149028450, gi... - gi|157820365|ref|NP_001102851.1| G patch domain and KOW motifs [Rattus norvegicus], gi|149028450|gb|...
289.0 [0..65] [381..27]
gi|76659412 - gi|76659412|ref|XP_886193.1| PREDICTED: similar to G patch domain and KOW motifs-containing protein ...
281.0 [0..58] [381..25]
gi|74007394 - gi|74007394|ref|XP_538033.2| PREDICTED: similar to G patch domain and KOW motifs [Canis familiaris]
281.0 [0..65] [381..29]
GPKOW_DANRE - G patch domain and KOW motifs-containing protein OS=Danio rerio GN=gpkow PE=2 SV=2
gi|55742464 - ref|NP_001007208.1| T54 protein-like [Danio rerio]
268.0 [0..19] [371..41]

Back

Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKAVLEAF SDSEDEDEKK LKGPQLITGF SAEEGVHYQN ETIQRIHEKK RAPKIIHIAS  60
   61 DENWMEKRKA RFKKKETEVH EKPSQLPDSG LNYGLNIRVA SSSAADNEIV DWKANNSNEK 120
  121 AQNKIATNKE STDILPEEVQ LVLNDLNDDV KSANSANLQP ITTNVVNEKD AYRKDIDELP 180
  181 EPSNMKDYSE IPVEEFGAAM LRGM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [205-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWNGQLSSKD AFDVNQRPTF LGMGAKPVDS ELTELDIWKN PKKTMFLPVK PLESNSALNS  60
   61 QNEHTEVQKK SNSI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [279-381]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNLTPSSELF RKRSRDNNLS RESSVSSKHL DYNSRNYNKR DRDPDRTKYR EYHSERRKQH  60
   61 RTDRYSDDYY QGRSYSYKKR SHRSDRYTER ENPDRSYRST RTL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle