YRC Public Data Repository - Protein Structure Prediction

Protein:	nup44
Organism:	Schizosaccharomyces pombe
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nup44.

Description	E-value	Query Range	Subject Range
gi\|11282554, gi\|... - gi\|1749746\|dbj\|BAA13930.1\| unnamed protein product [Schizosaccharomyces pombe], pir\|\|T43197 nucleopo...	224.0	[0..6]	[403..37]
gi\|149210809, gi... - gi\|86196832\|gb\|EAQ71470.1\| hypothetical protein MGCH7_ch7g877 [Magnaporthe grisea 70-15], gi\|3997121...	133.0	[0..146]	[401..57]
gi\|49086286, gi\|... - gi\|67517765\|ref\|XP_658668.1\| hypothetical protein AN1064.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	131.0	[0..2]	[395..22]
gi\|49528300 - gi\|49528300\|emb\|CAG61957.1\| unnamed protein product [Candida glabrata] gi\|49528300, gi\|... - gi\|50293145\|ref\|XP_448987.1\| unnamed protein product [Candida glabrata], gi\|49528300\|emb\|CAG61957.1\|...	130.0	[0..5]	[395..193]
gi\|44980537 - gi\|44980537\|gb\|AAS50470.1\| AAR105Wp [Ashbya gossypii ATCC 10895] gi\|45184928, gi\|... - gi\|45184928\|ref\|NP_982646.1\| AAR105Wp [Ashbya gossypii ATCC 10895], gi\|44980537\|gb\|AAS50470.1\| AAR10...	129.0	[0..8]	[396..255]
gi\|83766698 - gi\|83766698\|dbj\|BAE56838.1\| unnamed protein product [Aspergillus oryzae] gi\|169768740 - gi\|169768740\|ref\|XP_001818840.1\| hypothetical protein [Aspergillus oryzae RIB40]	124.0	[0..2]	[395..26]
NUP57 - Nucleoporin, essential subunit of the nuclear pore complex (NPC), functions as the organizing center... NUP57_YEAST - Nucleoporin NUP57 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP57 PE=1 SV=1	123.0	[0..5]	[392..134]
gi\|85116520 - gi\|85116520\|ref\|XP_965067.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28926869, gi\|... - gi\|38567116\|emb\|CAE76412.1\| related to nuclear pore protein NUP57 [Neurospora crassa], gi\|32422457\|r...	123.0	[0..88]	[399..5]
gi\|113564010, gi... - gi\|115457678\|ref\|NP_001052439.1\| Os04g0311300 [Oryza sativa (japonica cultivar-group)], gi\|113564010...	119.0	[0..32]	[350..1702]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSFGQQGS SIKAPSIGST GVFGQSNTTK PTAPFGSGSI FGSTNTNVGA GGPTGSSSAP  60
   61 PFGNSIFGKT QQQPTTSFSN TTTNAPQSTV FGQNAASRTG NSNTQPLFSW STVNNPTKPV 120
  121 DETNATIPSS LLLSSGISPN ATVSNAQYGP AQPPSVEEQV QKILN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	1y0fA
Description:	No description for 1y0fA was found.

Predicted Domain #2

Region A:
Residues: [166-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AWNLNHPDCA FQRFFYNKVP VEQAALYVKP PNYNQQKWDE AVANRPSNSV VPVLAVGFPD  60
   61 VQKRINMQIQ QVNTYRIRMR EIVETLGRLS NKHDLDFSIK LAEAKNRHVR LSERILRLAI 120
  121 KVHVLRHRGY ALKPNEEELR KKLDDLTKSL NNPEIFGRLN EIWARITLIF EGEKISEDQR 180
  181 SNLAKGVVDW RKNSDQLEVI TDVLRDHQVG LSYVVKLMQE DLATLNKQLT EHVPQSQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits