YRC Public Data Repository - Protein Structure Prediction

Protein:	sif2
Organism:	Schizosaccharomyces pombe
Length:	446 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sif2.

Description	E-value	Query Range	Subject Range
gi\|45190603, gi\|... - gi\|45190603\|ref\|NP_984857.1\| AEL004Wp [Ashbya gossypii ATCC 10895], gi\|44983582\|gb\|AAS52681.1\| AEL00... gi\|44983582 - gi\|44983582\|gb\|AAS52681.1\| AEL004Wp [Ashbya gossypii ATCC 10895]	474.0	[0..3]	[378..108]
gi\|46124763, gi\|... - gi\|46124763\|ref\|XP_386935.1\| hypothetical protein FG06759.1 [Gibberella zeae PH-1], gi\|42554226\|gb\|E...	471.0	[0..4]	[381..100]
gi\|32414729, gi\|... - gi\|32414729\|ref\|XP_327844.1\| hypothetical protein [Neurospora crassa], gi\|28919978\|gb\|EAA29367.1\| sp... gi\|85090825 - gi\|85090825\|ref\|XP_958603.1\| sporulation protein RMD1 [Neurospora crassa OR74A]	470.0	[0..4]	[382..121]
gi\|116207758, gi... - gi\|88183769\|gb\|EAQ91237.1\| hypothetical protein CHGG_03172 [Chaetomium globosum CBS 148.51], gi\|1162...	461.0	[0..4]	[381..116]
RMD1_YEAST - Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 RMD1 - Cytoplasmic protein required for sporulation gi\|190405021 - gi\|190405021\|gb\|EDV08288.1\| sporulation protein RMD1 [Saccharomyces cerevisiae RM11-1a] gi\|207346870 - gi\|207346870\|gb\|EDZ73232.1\| YDL001Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151941989 - gi\|151941989\|gb\|EDN60345.1\| protein required for maturation and assembly of cytochrome oxidase subun...	458.0	[0..6]	[378..66]
gi\|40739507, gi\|... - gi\|67540286\|ref\|XP_663917.1\| hypothetical protein AN6313.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	456.0	[0..2]	[383..467]
gi\|159129606 - gi\|159129606\|gb\|EDP54720.1\| YagE family protein [Aspergillus fumigatus A1163] gi\|71001724, gi\|... - gi\|71001724\|ref\|XP_755543.1\| YagE family protein [Aspergillus fumigatus Af293], gi\|66853181\|gb\|EAL93...	438.0	[0..2]	[382..106]
gi\|115383930, gi... - gi\|115383930\|ref\|XP_001208512.1\| sporulation protein RMD1 [Aspergillus terreus NIH2624], gi\|11419620...	437.0	[0..4]	[382..110]
gi\|169621173, gi... - gi\|169621173\|ref\|XP_001803997.1\| hypothetical protein SNOG_13794 [Phaeosphaeria nodorum SN15], gi\|11...	430.0	[0..2]	[378..90]
gi\|83769752 - gi\|83769752\|dbj\|BAE59887.1\| unnamed protein product [Aspergillus oryzae] gi\|220694388, gi... - gi\|238496545\|ref\|XP_002379508.1\| YagE family protein [Aspergillus flavus NRRL3357], gi\|220694388\|gb\|... gi\|169774843 - gi\|169774843\|ref\|XP_001821889.1\| hypothetical protein [Aspergillus oryzae RIB40]	429.0	[0..2]	[382..102]

Back

Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRIGPQRS TKTAAKLRLL PSTEEFDDFR RQDTGREVYS QIPQIEGSTA KRDAEHLGKR  60
   61 HREFLPRVTA YCTCDTFRVD LLFKFFQSRR SS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [93-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKTRPKQFDE CIYSPYSYNN EETTDLLPDT LESSRGTLNR ESSQESLQSI FEESGLDRN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.827	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin

Predicted Domain #3

Region A:
Residues: [152-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPLFREVFCF TYGVVVLWGY TIDEEHRFLR ELGRFEIEKL KIEDMEVEEF NYYITTLYQP  60
   61 RIFNDFIALR DASNYMIRLS ISHAIAQSVK ISLFEELVNE TIDATKDTPQ MIAETGRVNL 120
  121 KREEIMMAVG QLFILRININ LQGSVLDSPE LMWTEPQLEP IYTAARSYLE INQRVALLNQ 180
  181 RVEVIGDLLS MLKEQITHTH DESLEWIVVI LMGLLVLIAL FSIVVRLADG FKLNDFRLVI 240
  241 NNSNKFILLF ANTLFYIGGL EAVSITTEES FLFLHYVYII EEMGKGKKIK PYLSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits