YRC Public Data Repository - Protein Structure Prediction

Protein:	mug164
Organism:	Schizosaccharomyces pombe
Length:	501 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug164.

Description	E-value	Query Range	Subject Range
gi\|39579415, gi\|... - gi\|39579415\|emb\|CAE56721.1\| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi\|187040086\|em...	190.0	[0..3]	[498..41]
gi\|33310026 - gi\|33310026\|gb\|AAQ03243.1\|AF414112_1 putative cell wall protein FLO11p [Candida albicans] gi\|68482880, gi\|... - gi\|68482880\|ref\|XP_714666.1\| putative cell wall adhesin [Candida albicans SC5314], gi\|46436253\|gb\|EA...	186.0	[0..5]	[498..144]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	184.0	[0..6]	[497..1377]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	184.0	[0..6]	[497..771]
gi\|70878103 - gi\|70878103\|gb\|EAN91386.1\| trans-sialidase, putative [Trypanosoma cruzi] gi\|71648919 - gi\|71648919\|ref\|XP_813237.1\| trans-sialidase [Trypanosoma cruzi strain CL Brener]	181.0	[0..7]	[499..779]
gi\|37930527, gi\|... - gi\|37930527\|gb\|AAP74661.1\| elicitor-like transglutaminase M81 [Phytophthora infestans], gi\|23505399\|...	180.0	[0..8]	[498..660]
gi\|31540577 - gi\|31540577\|gb\|AAP48996.1\| cellulosomal scaffoldin anchoring protein C; ScaC [Acetivibrio cellulolyt...	172.0	[0..2]	[484..463]
gi\|88188037, gi\|... - gi\|88602575\|ref\|YP_502753.1\| mucin 2, intestinal/tracheal [Methanospirillum hungatei JF-1], gi\|88188...	170.0	[0..3]	[494..1630]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQRLEQLQM QTSNILKELH STSIFTDSTT SQLHNGGENS VMDTEESSAI DKLSASLQQV  60
   61 NISSPSVPTS QSRVTQGQSL GNTQISNPTS KTNNVRAKAR NIRNPSQRLR PSTSLARLSN 120
  121 NAPRIPKEAS LHENSISSKE SPSVTTSKHV ATITKPSTSS IARMSSNARI AAIPRAKSSM 180
  181 AVRSPSRLGN GPNVRSPKVG FNAKSDDSPV VKSPGSNDKP SASPRISVRS LGNSSVVRPP 240
  241 TRTSTTRPLS RVNV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [255-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNASGSISKN STSPSKVKVN ASTKIVRPVS AAQTVRPGSR IFRENSASNT QRPNVSATSN  60
   61 STVRVASSLA VRPVSRNAQA RTPSRLEQRE VNVK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [349-501]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSAKIVRPG TSLGVRSPSR IQSTLSSRTT TGNVRTKAAN IVRPSSSINR RPPSSINQRP  60
   61 PSNLRILAPS RSRATIHERP SSSILHRHAH SLTSSSFSTK TLATTKEIQN SPTLVESSTV 120
  121 VHHDPSYLQN QTSEINDTNH SSHSSPLDLN RMI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits