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View Structure Prediction Details

Protein: SPAC890.06
Organism: Schizosaccharomyces pombe
Length: 1315 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC890.06.

Description E-value Query
Range
Subject
Range
gi|37360098 - gi|37360098|dbj|BAC98027.1| mKIAA0791 protein [Mus musculus]
1584.0 [0..8] [1315..44]
NUP155 - nucleoporin 155kDa
1577.0 [0..7] [1315..11]
gi|114600531 - gi|114600531|ref|XP_517798.2| PREDICTED: nucleoporin 155kDa [Pan troglodytes]
1570.0 [0..7] [1315..11]
gi|73954311 - gi|73954311|ref|XP_536500.2| PREDICTED: similar to nucleoporin 155kDa isoform 1 [Canis familiaris]
1545.0 [0..7] [1315..11]
NU155_RAT - Nuclear pore complex protein Nup155 OS=Rattus norvegicus GN=Nup155 PE=1 SV=1
1538.0 [0..9] [1315..12]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDINDPSFSS TENGIYELLS RGYAAIEAAT ERDLKLPELG DIIGQVHAPE YISQVLSGWK  60
   61 PFYLRSVVNI PDRIFEQYNR TECFT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QMGLFAEIQR AWITVDNRLF LWDYLSGQNF QAYEDLSHTI VNVKLVRPKA NVFVSEIQHL  60
   61 LVIATSQEML LLGVTIDEKT GELSFFSTGI QISVQGINVN CIVSSEDGRI FFSGNKDPNL 120
  121 YEFSYQLEEG WFSRRCSKIN ITGSVFDNFI P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [237-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFFSFGTHGD GIKQIAVDDS RSLLYVLRET SSVSCYELTK NGVNRCVFYS FSSMISQAQM  60
   61 LNATSPLLDP RTTQIVSIVP IPAYESQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [324-579]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QIYCVAITST GCRFYMRGGR GPISHYAPSN STLSSTPPST LQLTFVRFPP PMQVENYASS  60
   61 RNYPANPFFL QNQSTSQQQP ERSSAVKTTP MKCSSLSNIY TSDLFFAISS SNTNEGDVVC 120
  121 CTAPEVGRIA NAWQSGTQPS LIESSMYVPI KGFVQDIKCI QNSRERNELV SQFNTPPPTF 180
  181 AILTNTGVYV VVHRRPIDVL ASAIRMGPSL SSGIDGQVQL FFESVGRAEG CATCLGIVSG 240
  241 CLDQGDFSHA AANFSG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [580-711]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STTKLAQADL LDIVKKYYIE FGGKAFIDQS RYNNQYDSSS LEFVRLSGCH DGLASSISRI  60
   61 IRNVWKNHVI IAKKMQNKRI HYAPAFNATE ILKIQSGLLY LSTFLENNKS FIEGLNSPNT 120
  121 LIGSSNVADE IA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [712-822]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQAEHRALSA LLLVLQQIVE GISFLLFLND TGVSDFHEIV SSTSIDIQKS CSNMTFGEFF  60
   61 TSKRGREVTK ELVNSLVNRH LQSGGNIDMV SQLLRKKCGS FCSADDVLIF K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [823-952]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVESLKKAKD TVDIEERQSL IELSYTLFKK AAHVFTPEDL RLAVEEYKSL NAYTTAVNLA  60
   61 LHVASARDDR NQALSYLVDG MPENDPRREP FESRTKCYSY IFEILDSLES QMSNDSSAIK 120
  121 VDVYDTIQRS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [953-1181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDELFHYCFY DWYSFKGLTD RLIEIDSPYI QSYLERNSTK DMKIADLLWQ YYAKREQYYQ  60
   61 ASIVLYDLAT THLAFSLEQR IEYLTRAKGF GSCHVPNSLR HKMNKVMLSV LEQLDVASIQ 120
  121 DDVLIAIRGD MRIPTSKREE LSKQLDGEII PLSDLFNNYA DPLGYGEICL SIFQCADYRG 180
  181 INEILNCWES IIKTTHENAI ISPVGSSPVE AVSSTLKNLT LRFSQSENV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1182-1315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPIEQIIDIT ERYAFDQQGE AVATGWVIDT FLGAGVSHEL IFIVLNQLYD RREKPWQGKD  60
   61 RLFFLIKEVT HLLKLWHEVS VRAGVAQTSK PSFDAPLVLE AIEKYKNALG APDTATKSCK 120
  121 ENLISLDSEI RQTY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle