YRC Public Data Repository - Protein Structure Prediction

Protein:	gef3
Organism:	Schizosaccharomyces pombe
Length:	525 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gef3.

Description	E-value	Query Range	Subject Range
gi\|49092860, gi\|... - gi\|67526593\|ref\|XP_661358.1\| hypothetical protein AN3754.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	295.0	[0..6]	[516..1119]
gi\|36796741, gi\|... - gi\|36796741\|ref\|NP_082305.1\| dynamin binding protein [Mus musculus], gi\|34732707\|gb\|AAQ81299.1\| TUBA... gi\|162319584, gi... - gi\|162319584\|gb\|AAI56875.1\| Dynamin binding protein [synthetic construct], gi\|151555199\|gb\|AAI48370....	292.0	[0..9]	[518..721]
gi\|109463990, gi... - gi\|109463990\|ref\|XP_001060754.1\| PREDICTED: similar to Dynamin-binding protein (Scaffold protein Tub...	285.0	[0..9]	[518..722]
gi\|73998230 - gi\|73998230\|ref\|XP_861435.1\| PREDICTED: similar to dynamin binding protein isoform 2 [Canis familiar...	283.0	[0..3]	[518..723]
DNMBP - dynamin binding protein	282.0	[0..3]	[518..716]
gi\|114632316 - gi\|114632316\|ref\|XP_001167601.1\| PREDICTED: dynamin binding protein isoform 2 [Pan troglodytes]	281.0	[0..3]	[518..716]
gi\|109090226 - gi\|109090226\|ref\|XP_001106775.1\| PREDICTED: similar to dynamin binding protein [Macaca mulatta]	280.0	[0..3]	[518..716]

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Predicted Domain #1

Region A:
Residues: [1-431]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPRMFQSR GKRVVSDSLP IANSTHTLED TLKLRPDWTI ALSQHETETR STRTSCSTTT  60
   61 ESTIAMRSKQ KAIISVLEEF RDSEAAYVHD LHVAQRYYAD RLSDRVKKSE WKDVFEIFLV 120
  121 LCKQASLFEI EMHKSLNDEI NYILDDQDAC LKPKPSVAQL FLSWLPKLSA VYGRYCVIQE 180
  181 NIGKKVEKWM KNSSISEYLQ ECDSMAKIES NSWNLDSFLV KPVQRFLKYP LLLNQLYRSA 240
  241 SLGIISDYVL LGEACHKSEI ASQRMNELKR RRDIIITALD SVSNSQEVLL LSTDSIDKKI 300
  301 AKLQNSTNIF YVPEHEPILA FVHQLSSSYT NLLNLRSAIC DWLKFSRYHY LKFFTFVEAY 360
  361 SVFCKDTKSA DKWALISVAL DNIAKGAVLR LTEQCQTSVL RPISNGILFF RNPLCVTDVW 420
  421 IKKATAFSKR R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	2pz1A
Description:	No description for 2pz1A was found.

Predicted Domain #2

Region A:
Residues: [432-525]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSQVFEEDLE SFPLLSNCLL EELPLFLEMA RNVTDECILA FAQIQATFYD TIQKVLEPVV  60
   61 AKFNLTDHQD IPSIESIMDF TSLRSSMESS PKSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	2ficA
Description:	No description for 2ficA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits