YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC144.08
Organism:	Schizosaccharomyces pombe
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC144.08.

Description	E-value	Query Range	Subject Range
gi\|108804351, gi... - gi\|68562224\|ref\|ZP_00601494.1\| DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone Dna...	133.0	[0..56]	[213..2]
gi\|47574814 - gi\|47574814\|ref\|ZP_00244849.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... DNAJ_METPP - Chaperone protein DnaJ OS=Methylibium petroleiphilum (strain PM1) GN=dnaJ PE=3 SV=1	132.0	[0..57]	[219..1]
gi\|121607966, gi... - gi\|121607966\|ref\|YP_995773.1\| chaperone protein DnaJ [Verminephrobacter eiseniae EF01-2], gi\|1215526...	132.0	[0..57]	[219..3]
gi\|7441921, gi\|1... - pir\|\|T06594 heat shock protein dnaJ - garden pea, gi\|1707657\|emb\|CAA96305.1\| DnaJ homologue [Pisum s...	132.0	[0..22]	[219..26]
DNAJ_CARHZ - Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901...	131.0	[0..59]	[213..2]
DNAJ_BORBR - Chaperone protein DnaJ OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=dna... DNAJ_BORBR - Chaperone protein DnaJ OS=Bordetella bronchiseptica GN=dnaJ PE=3 SV=1	131.0	[0..57]	[219..1]
DNAJ_CUPNH - Chaperone protein DnaJ OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=d...	130.0	[0..57]	[220..1]
DNAJ_RALSO - Chaperone protein dnaJ OS=Ralstonia solanacearum GN=dnaJ PE=3 SV=1 DNAJ_RALSO - Chaperone protein DnaJ OS=Ralstonia solanacearum (strain GMI1000) GN=dnaJ PE=3 SV=1	130.0	[0..57]	[220..1]
DNAJ_BORPA - Chaperone protein DnaJ OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=dna... DNAJ_BORPA - Chaperone protein DnaJ OS=Bordetella parapertussis GN=dnaJ PE=3 SV=1	130.0	[0..57]	[219..1]
gi\|82703356, gi\|... - gi\|82703356\|ref\|YP_412922.1\| heat shock protein DnaJ [Nitrosospira multiformis ATCC 25196], gi\|82411...	129.0	[0..57]	[213..10]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKQAGNQSF RPFISFAQKS LFNRQITGNH WIFARFKFYP LNKIVNYNHF HSSSCQSEAK  60
   61 NFYKQFEGDI SDPPPKGPFD IDLGALKSSY LRKMKTLHPD VAQGKDAALA QRDSAELSKA 120
  121 YNTLKAPLTR AEYILQLQGI NPVSEDISNS DPEFLMEIMD VHENISASRD SPEKLLQLSQ 180
  181 ENQGRKVQEI NEIRKAMESS NWDSALLYVN RLRYWNTIDK ILHDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	1fpoA
Description:	HSC20 (HSCB), N-terminal (J) domain; HSC20 (HSCB), C-terminal oligomerisation domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.106988907594358	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: