YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1683.06c
Organism:	Schizosaccharomyces pombe
Length:	310 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1683.06c.

Description	E-value	Query Range	Subject Range
gi\|13472783, gi\|... - gi\|14023530\|dbj\|BAB50136.1\| nucleoside hydrolase [Mesorhizobium loti MAFF303099], gi\|13472783\|ref\|NP...	387.0	[0..2]	[309..6]
gi\|146277154, gi... - gi\|83369561\|ref\|ZP_00914414.1\| inosine-uridine preferring nucleoside hydrolase [Rhodobacter sphaeroi...	384.0	[0..2]	[309..6]
gi\|83363719, gi\|... - gi\|83374918\|ref\|ZP_00919684.1\| inosine-uridine preferring nucleoside hydrolase [Rhodobacter sphaeroi...	382.0	[0..2]	[309..6]
gi\|77387889, gi\|... - gi\|77463471\|ref\|YP_352975.1\| nucleoside hydrolase [Rhodobacter sphaeroides 2.4.1], gi\|77387889\|gb\|AB...	382.0	[0..2]	[309..6]
gi\|83846473, gi\|... - gi\|83942380\|ref\|ZP_00954841.1\| inosine-uridine preferring nucleoside hydrolase [Sulfitobacter sp. EE...	381.0	[0..2]	[309..5]
gi\|83953600, gi\|... - gi\|83953600\|ref\|ZP_00962321.1\| inosine-uridine preferring nucleoside hydrolase [Sulfitobacter sp. NA...	379.0	[0..2]	[309..5]
gi\|114543261, gi... - gi\|114764313\|ref\|ZP_01443541.1\| inosine-uridine preferring nucleoside hydrolase [Roseovarius sp. HTC...	377.0	[0..2]	[309..4]
gi\|110680321, gi... - gi\|110680321\|ref\|YP_683328.1\| inosine-uridine preferring nucleoside hydrolase, putative [Roseobacter...	377.0	[0..2]	[309..5]
gi\|89054295, gi\|... - gi\|89054295\|ref\|YP_509746.1\| inosine/uridine-preferring nucleoside hydrolase [Jannaschia sp. CCS1], ...	375.0	[0..2]	[309..4]
gi\|237707382, gi... - gi\|237707382\|ref\|ZP_04537863.1\| pyrimidine-specific ribonucleoside hydrolase rihA [Escherichia sp. 3... gi\|26107024, gi\|... - gi\|26246625\|ref\|NP_752665.1\| Hypothetical protein ybeK [Escherichia coli CFT073], gi\|26107024\|gb\|AAN... gi\|91209692, gi\|... - gi\|91209692\|ref\|YP_539678.1\| hypothetical protein YbeK [Escherichia coli UTI89], gi\|91071266\|gb\|ABE0...	374.0	[0..1]	[308..14]

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Predicted Domain #1

Region A:
Residues: [1-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIIDTDPG QDDAITALLA IASPEIELLG VTTVAGNVPV SMTTRNALQM LDLAGRPDIP  60
   61 VYAGSNKPLL RAPITATHVH GASGFEGAVL PPPSRKENEG HAVDFIIDTL RNNEPGTITI 120
  121 CTIGPLTNIA LALNKAPEVI QRAKQIVMMA GAFSEVGNIT PAAEFNIYVD PHAAQMVLSS 180
  181 GIPIVMMPLD ITHQLHTSAK RIARMEALPN RVGPVVAAWL RMEKAYEAKK YGTDGGPLHD 240
  241 PNTVMWLLRP DIYSGRKVNV QIETQSELTM GMSVVDWWQV GLLPANVTFL RTVDDDEFYE 300
  301 VLIERLGRLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	1yoeA
Description:	Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits