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View Structure Prediction Details

Protein: epe1
Organism: Schizosaccharomyces pombe
Length: 948 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for epe1.

Description E-value Query
Range
Subject
Range
PHF8 - PHD finger protein 8
558.0 [0..75] [627..24]
gi|114688773 - gi|114688773|ref|XP_521077.2| PREDICTED: PHD finger protein 8 [Pan troglodytes]
556.0 [0..75] [627..108]
gi|109511632 - gi|109511632|ref|XP_001062233.1| PREDICTED: similar to PHD finger protein 8 isoform 2 [Rattus norveg...
550.0 [0..75] [627..24]
PHF8_MOUSE - (Q80TJ7) PHD finger protein 8 (Fragment)
542.0 [0..75] [627..6]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSWLEYDDI INQDIDIPSN DLSGSGTLCV GVHSSLLENS LNSIDSFISS KEEISWCGNQ  60
   61 STPIATKSHL SCINPQYVNP FDTSPVSVDT EFQDTYLLDA PSFAQPHFSE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-539]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQSVDKTRSR CLSRNRRRKR HPNLHKNHQR LLGMSFPQDG FRRMPAESVN FSYFRDTGFN  60
   61 EPTIFPSSDT QNTRQLNLSK IATLIGYDCP LALVDVVTQK QIPNKMDMES WVKYMSLEPS 120
  121 KRGRIYDVLS LEVSTTKLAY YVRKPNIVRD LDLVNTVWPP GSFALGEYPH VDTYCLMSAE 180
  181 NSYTEFHIEF GGSSAYYNIL DGCKIFYLIP GTSKNWEAYT AWLTSSNDSD KKFLPNMVDV 240
  241 CYCVEVHSQQ TILVPSGWIY AVVTPCDTIS IAGNFLTFLH IYPQLSIYNL ELQLGIEKEY 300
  301 QYPYFESIMW YTAIHFYLAF PDNSSRDGID DIIAEYETGR LFDINAFTEQ ELDGFEELLN 360
  361 YLYIRAQILR DCDIIIDIYN EPVKISKNNG YNSAYTMVPP DLDEICVDFV QKFGAWITYH 420
  421 HRRSAKHPS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.39794
Match: 2yu1A
Description: No description for 2yu1A was found.

Predicted Domain #3
Region A:
Residues: [540-604]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CNCFSHLQTK LIDSGPKPAN NSYQHQSNFI GVVISTNHNI IKKCQESQIQ TGKNNCSFQL  60
   61 VKKRI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [605-762]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSTKKAPSWR SIIKAFKKRE NTRCNFLSSL HATTFREDIV VRPKIKSFVL EQLIFQALFS  60
   61 FAINWTPSFF LNHSNFENIA LSKETFNFGG EANCENTDTT LFTTWGDQGF RPSDSICYND 120
  121 FNLLETANSD AEASIHELEL QPLNAVNERE VDISQTDM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [763-948]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPSTALDTRV DTRVDSLPEF SNLILSPSSN DDSFQLDDLL SPSSSNLKQQ IQKVVPQNSL  60
   61 EFSVGEKEKK AAEYSLLHTF SYKRLSMENE KPDTTKVPLK YNIQHEEMKA YRRKNDLEYI 120
  121 DQHFASSKSG ISNGRNNNKE VNLTKAENVG IKKRRIMKNE NNIYDFEDHS PVREKWGHRL 180
  181 RSRGAS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle