YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1281.06c
Organism:	Schizosaccharomyces pombe
Length:	479 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1281.06c.

Description	E-value	Query Range	Subject Range
gi\|145020356, gi... - gi\|39952295\|ref\|XP_363864.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA56139....	468.0	[0..7]	[478..1]
gi\|85104874 - gi\|85104874\|ref\|XP_961824.1\| acyl-CoA desaturase 1 [Neurospora crassa OR74A] gi\|28923402, gi\|... - gi\|32408269\|ref\|XP_324616.1\| hypothetical protein [Neurospora crassa], gi\|28923402\|gb\|EAA32588.1\| ac...	464.0	[0..7]	[478..1]
gi\|70986862, gi\|... - gi\|70986862\|ref\|XP_748918.1\| stearic acid desaturase (SdeA) [Aspergillus fumigatus Af293], gi\|668465... gi\|159123313 - gi\|159123313\|gb\|EDP48433.1\| stearic acid desaturase (SdeA), putative [Aspergillus fumigatus A1163]	463.0	[0..33]	[478..6]
ACO1_AJECA - Acyl-CoA desaturase OS=Ajellomyces capsulatus GN=OLE1 PE=1 SV=1 gi\|757860 - gi\|757860\|emb\|CAA59939.1\| delta-9 fatty acid desaturase; stearoyl-CoA desaturase [Histoplasma capsul...	462.0	[0..16]	[478..7]
gi\|111057971 - gi\|111057971\|gb\|EAT79091.1\| predicted protein [Phaeosphaeria nodorum SN15]	448.0	[0..24]	[478..1]
gi\|42551697, gi\|... - gi\|46123613\|ref\|XP_386360.1\| hypothetical protein FG06184.1 [Gibberella zeae PH-1], gi\|42551697\|gb\|E...	445.0	[0..11]	[478..1]
gi\|49100447, gi\|... - gi\|67541122\|ref\|XP_664335.1\| hypothetical protein AN6731.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	443.0	[0..24]	[478..1]
gi\|119178708, gi... - gi\|90299781\|gb\|EAS29412.1\| acyl-CoA desaturase [Coccidioides immitis RS], gi\|119178708\|ref\|XP_001240...	442.0	[0..34]	[478..11]
gi\|116196400, gi... - gi\|88180711\|gb\|EAQ88179.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	442.0	[0..7]	[477..1]
gi\|83765376 - gi\|83765376\|dbj\|BAE55519.1\| unnamed protein product [Aspergillus oryzae] gi\|169766100 - gi\|169766100\|ref\|XP_001817521.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220700655, gi... - gi\|238482733\|ref\|XP_002372605.1\| stearic acid desaturase (SdeA), putative [Aspergillus flavus NRRL33...	442.0	[0..29]	[478..2]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAPSATAFS SATTQPTTEG NASMRKRTIP VVPSVPERKW DPKAPKHIQE QPWTMQNWWR  60
   61 HLNWLHCMLI FGLPMIAIYG VFTT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLQTKTLIFA IIYYAYSGLG ITAGYHRLWS HRAYKAKKPL EYFLAAGGAA AFEGSIRWWS  60
   61 RDHRAHHRYT DTDKDPYNVK KGFWYAHVGW MIILQNPRRI GRSDVSDLNS DPFVMFNHRH 120
  121 FLPIASFMAF IFPSLFCGLL WG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.481486
Match:	PF00487.15
Description:	No description for PF00487.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [227-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYRGGYFYAG VCRLVFVHHA TFCVNSLAHL IGSQPFDDTN SARNHFITAL VTLGEGNHNY  60
   61 HHAFPNDYRN GLRWYEYDPT KIFIYIASLF GLAYNLNTFP DNEIQKGIVQ QKQKVLDRWR 120
  121 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.522879
Match:	2bihA
Description:	crystal structure of the Molybdenum-containing nitrate reducing fragment of Pichia angusta assimilatory nitrate reductase
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [348-479]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLNWGIPLEQ LPVMEFEDFL EQSKTRPLVL INGVVHDMTG FEHPGGQGLL RSAFGKDATA  60
   61 AFNGGVYDHT NGAHNLLSTY RVAVVRGGME VEVWKSGAGA QLPMKDTQGQ KIVRVGEQIT 120
  121 RIQPPIEAAA AN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	1fcbA
Description:	Flavocytochrome b2, C-terminal domain; Flavocytochrome b2, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits