YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1919.13c
Organism:	Schizosaccharomyces pombe
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1919.13c.

Description	E-value	Query Range	Subject Range
gi\|8778331 - gi\|8778331\|gb\|AAF79340.1\|AC002304_33 F14J16.3 [Arabidopsis thaliana]	292.0	[0..12]	[229..506]
gi\|32421913, gi\|... - gi\|32421913\|ref\|XP_331400.1\| hypothetical protein [Neurospora crassa], gi\|28919310\|gb\|EAA28770.1\| pr... gi\|85089562 - gi\|85089562\|ref\|XP_958006.1\| hypothetical protein NCU09008 [Neurospora crassa OR74A]	288.0	[0..34]	[272..88]
gi\|40740947, gi\|... - gi\|67903724\|ref\|XP_682118.1\| hypothetical protein AN8849.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	278.0	[0..10]	[281..37]
gi\|45187652, gi\|... - gi\|45187652\|ref\|NP_983875.1\| ADL221Cp [Ashbya gossypii ATCC 10895], gi\|44982413\|gb\|AAS51699.1\| ADL22... gi\|44982413 - gi\|44982413\|gb\|AAS51699.1\| ADL221Cp [Ashbya gossypii ATCC 10895]	275.0	[0..2]	[275..16]
YIL096C - Putative protein of unknown function; associates with precursors of the 60S ribosomal subunit; predi... gi\|151943071 - gi\|151943071\|gb\|EDN61406.1\| conserved protein [Saccharomyces cerevisiae YJM789] BMT5_YEAST - 25S rRNA (uridine(2634)-N(3))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	271.0	[0..8]	[275..34]
orf19.7366 - orf19.7366 CGDID:CAL0004722 Assembly 19, Contig19-2513 (46571, 45510) CDS, reverse complemented, tra... gi\|46438279, gi\|... - gi\|68478677\|ref\|XP_716607.1\| hypothetical protein CaO19.7366 [Candida albicans SC5314], gi\|46438279\|...	265.0	[0..3]	[254..31]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKARFKEA RRLQKRNLNN AIGSSSINSQ NSLTNDKIGK GKNKGPTERY VLPFEKNNRF  60
   61 LLLGEGNFSF AFSLLLHHVS SEGFVLATSY DSKEDLKQKY PDAAEYISKI EINGGKVMHE 120
  121 IDATKLHLHK KLKTQKFDTI FWNFPHSGKG IKDQDRNILD NQKMLLAFFK ASKFLLSEKG 180
  181 VIVITLAETK PYTLWNLKGL AKDAGYTSLM TEKFDSSFYP EYSHRRTIGW IDGISERSPW 240
  241 KGELRDSRHY CFVVNGSNIK PYNQRKEKRK RSELSDDSSD SS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2pbfA
Description:	No description for 2pbfA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits