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View Structure Prediction Details

Protein: SPBC28F2.09
Organism: Schizosaccharomyces pombe
Length: 369 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC28F2.09.

Description E-value Query
Range
Subject
Range
gi|75516982, gi|... - gi|75517271|gb|AAI01775.1| STON1-GTF2A1L readthrough transcript [Homo sapiens], gi|75516982|gb|AAI01...
174.0 [0..28] [368..852]
gi|114577336 - gi|114577336|ref|XP_515467.2| PREDICTED: stoned B/TFIIA-alpha/beta-like factor isoform 3 [Pan troglo...
174.0 [0..28] [368..852]
gi|73964364 - gi|73964364|ref|XP_854907.1| PREDICTED: similar to Transcription initiation factor IIA subunit 1 (Ge...
164.0 [0..7] [368..32]
gi|8778565, gi|2... - gi|8778565|gb|AAF79573.1|AC022464_31 F22G5.18 [Arabidopsis thaliana], pir||D86209 protein F22G5.18 [...
162.0 [0..3] [362..4]
gi|51980533, gi|... - gi|58865842|ref|NP_001012136.1| general transcription factor IIA, 1-like [Rattus norvegicus], gi|519...
160.0 [0..28] [368..146]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSIVGEVY HHVILDVIAN SRSDFEENGV DDATLRELQN LWQSKLVATD VATFPWAQAP  60
   61 VGTFPIGQLF DPVSGLRTDS LDVTAPAVAN SPILNNIAAI RAVQQMDTFA QQHGNSNYYS 120
  121 PPTPSLPQSA TNISFDSSAI PNVQSNPNNT APFPSYSSNS LQLPTNQTAD SPIINDHSTA 180
  181 NVTSTGQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.221849
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [188-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHAPDSSSTN SFGGLLLPNQ NSPKKSELGE TESSNTTPAN SRNDVPQTDG AIHDLDDAGS  60
   61 PSNFESNRFA IAQKADAEIY EVLKKNRILQ IDGTIEDNED EKKPPVDTPS DEAINSDLDD 120
  121 PDSDEAPETE EGSDIGQAIV LCLYDKVNHH KNKWKCVFRD GVVGVNGKDY LFFKANGEFE 180
  181 WI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.69897
Match: 1rm1C
Description: Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
Matching Structure (courtesy of the PDB):

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