YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC28F2.09
Organism:	Schizosaccharomyces pombe
Length:	369 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC28F2.09.

Description	E-value	Query Range	Subject Range
gi\|75516982, gi\|... - gi\|75517271\|gb\|AAI01775.1\| STON1-GTF2A1L readthrough transcript [Homo sapiens], gi\|75516982\|gb\|AAI01...	174.0	[0..28]	[368..852]
gi\|114577336 - gi\|114577336\|ref\|XP_515467.2\| PREDICTED: stoned B/TFIIA-alpha/beta-like factor isoform 3 [Pan troglo...	174.0	[0..28]	[368..852]
gi\|73964364 - gi\|73964364\|ref\|XP_854907.1\| PREDICTED: similar to Transcription initiation factor IIA subunit 1 (Ge...	164.0	[0..7]	[368..32]
gi\|8778565, gi\|2... - gi\|8778565\|gb\|AAF79573.1\|AC022464_31 F22G5.18 [Arabidopsis thaliana], pir\|\|D86209 protein F22G5.18 [...	162.0	[0..3]	[362..4]
gi\|51980533, gi\|... - gi\|58865842\|ref\|NP_001012136.1\| general transcription factor IIA, 1-like [Rattus norvegicus], gi\|519...	160.0	[0..28]	[368..146]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSIVGEVY HHVILDVIAN SRSDFEENGV DDATLRELQN LWQSKLVATD VATFPWAQAP  60
   61 VGTFPIGQLF DPVSGLRTDS LDVTAPAVAN SPILNNIAAI RAVQQMDTFA QQHGNSNYYS 120
  121 PPTPSLPQSA TNISFDSSAI PNVQSNPNNT APFPSYSSNS LQLPTNQTAD SPIINDHSTA 180
  181 NVTSTGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.221849
Match:	1m2vB
Description:	Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [188-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHAPDSSSTN SFGGLLLPNQ NSPKKSELGE TESSNTTPAN SRNDVPQTDG AIHDLDDAGS  60
   61 PSNFESNRFA IAQKADAEIY EVLKKNRILQ IDGTIEDNED EKKPPVDTPS DEAINSDLDD 120
  121 PDSDEAPETE EGSDIGQAIV LCLYDKVNHH KNKWKCVFRD GVVGVNGKDY LFFKANGEFE 180
  181 WI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1rm1C
Description:	Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits