YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC10F6.08c
Organism:	Schizosaccharomyces pombe
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC10F6.08c.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	147.0	[0..2]	[328..1924]
gi\|116062137 - gi\|116062137\|dbj\|BAF34699.1\| fast skeletal myosin heavy chain isoform mMYH-6 [Oryzias latipes]	123.0	[0..1]	[331..920]
gi\|47208509 - gi\|47208509\|emb\|CAF96454.1\| unnamed protein product [Tetraodon nigroviridis]	123.0	[0..1]	[328..357]
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1	123.0	[0..1]	[331..921]
gi\|41350446 - gi\|41350446\|gb\|AAS00505.1\| fast skeletal muscle myosin heavy chain [Siniperca chuatsi]	123.0	[0..1]	[331..922]
gi\|806511 - gi\|806511\|dbj\|BAA09067.1\| myosin heavy chain [Cyprinus carpio]	123.0	[0..1]	[331..181]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENPPYHVSI SKSEEIKYRQ KCKDLKARIQ EIQKGNQELL SKYEVIRRAV KRGRLERAIL  60
   61 MEQLELQSEA KSREFGQRSE PSPPPPPEGI KIKISTKGAG NPSAKKLKIS TEETSDTNVA 120
  121 LNNTSEISHK SSNNSQPKDA SVNDTDADFE QQNQVVQSKD EKITNTDPIP SPIITNLKTE 180
  181 SSKSSGAKKA TSNAKITDTM LFNHFSSIQK PKLKAEGSTL KGQALKKTLE DTWNNLTEEE 240
  241 KKPYHEGLLA AREKAREARR RRSAQNSAKL EKEKAKEKQK DKDQEQDTVS DKNQIDEIEK 300
  301 GQKEVDEEPV SEPTTSPILP PKNQEPIRMG GFTVVNRSSN A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.30103
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits