YRC Public Data Repository - Protein Structure Prediction

Protein:	mug33
Organism:	Schizosaccharomyces pombe
Length:	336 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug33.

Description	E-value	Query Range	Subject Range
PALI_NEUCR - pH-response regulator protein palI/rim-9 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS ... PALI_NEUCR - pH-response regulator protein palI/rim-9 OS=Neurospora crassa GN=rim-9 PE=3 SV=1	354.0	[0..3]	[328..2]
gi\|46128661, gi\|... - gi\|46128661\|ref\|XP_388884.1\| hypothetical protein FG08708.1 [Gibberella zeae PH-1], gi\|42549562\|gb\|E...	349.0	[0..3]	[314..2]
PALI_YARLI - pH-response regulator protein palI/RIM9 OS=Yarrowia lipolytica GN=RIM9 PE=3 SV=3 PALI_YARLI - pH-response regulator protein palI/RIM9 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RIM9 PE=...	345.0	[0..1]	[330..3]
gi\|50554661, gi\|... - gi\|50554661\|ref\|XP_504739.1\| YALI0E33627p [Yarrowia lipolytica], gi\|49650608\|emb\|CAG80343.1\| YlRIM9 ... gi\|49650608 - gi\|49650608\|emb\|CAG80343.1\| YALI0E33627p [Yarrowia lipolytica]	342.0	[0..3]	[330..1]
PALI_MAGGR - pH-response regulator protein palI/RIM9 OS=Magnaporthe grisea GN=RIM9 PE=3 SV=1 PALI_MAGO7 - pH-response regulator protein palI/RIM9 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8...	336.0	[0..22]	[334..21]
PALI_EMENI - pH-response regulator protein palI/RIM9 OS=Emericella nidulans GN=palI PE=1 SV=2 PALI_EMENI - pH-response regulator protein palI/RIM9 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 11...	329.0	[0..1]	[332..1]
gi\|40740898, gi\|... - gi\|67537366\|ref\|XP_662457.1\| hypothetical protein AN4853.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	323.0	[0..1]	[332..1]
gi\|44983522, gi\|... - gi\|45190580\|ref\|NP_984834.1\| AEL027Wp [Ashbya gossypii ATCC 10895], gi\|44983522\|gb\|AAS52658.1\| AEL02... gi\|44983522 - gi\|44983522\|gb\|AAS52658.1\| AEL027Wp [Ashbya gossypii ATCC 10895]	299.0	[0..1]	[318..1]
gi\|115385076, gi... - gi\|115385076\|ref\|XP_001209085.1\| pH-response regulator protein palI/RIM9 [Aspergillus terreus NIH262...	262.0	[0..1]	[318..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIRSATPSL ILLVIAIVFF VLAICTPPLA NNLTLGKYGD VRFGVFGYCL NSNCSKPLVG  60
   61 YNSDYLDEHA KDGFRTSVIV RQRASYGLVI VPVSACICLI STIMTIFAHI GAIARSPGFF 120
  121 NVIGTITFFN IFITAIAFVI CVITFVPHIQ WPSWLVLANV GIQLIVLLLL LVARRQATRL 180
  181 QAKHLRRATS GSLGYNPYSL Q

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	59.79588
Match:	PF08739.1
Description:	No description for PF08739.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [202-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSNIFSTSS RKGDLPKFSD YSAEKPMYDT ISEDDGLKRG GSVSKLKPTF SNDSRSLSSY  60
   61 APTVREPVPV PKSNSGFRFP FMRNKPAEQA PENPFRDPEN PFKDPASAPA PNPWSINDVQ 120
  121 ANNDKKPSRF SWGRS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits