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View Structure Prediction Details

Protein: mep33
Organism: Schizosaccharomyces pombe
Length: 292 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mep33.

Description E-value Query
Range
Subject
Range
gi|1236259 - gi|1236259|dbj|BAA12184.1| unnamed protein product [Schizosaccharomyces pombe]
305.0 [0..1] [292..1]
ZC3HF_RAT - Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=1 SV=1
297.0 [0..1] [277..1]
ZC3HF_MOUSE - Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2
297.0 [0..1] [277..1]
gi|6841256 - gi|6841256|gb|AAF28981.1|AF161421_1 HSPC303 [Homo sapiens]
295.0 [0..27] [277..58]
gi|114582083 - gi|114582083|ref|XP_001160801.1| PREDICTED: similar to LEREPO4 protein isoform 1 [Pan troglodytes]
294.0 [0..1] [277..1]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKKAAKGK GDPGKAAKKD PTKKAADATF GLKNKNRSTK VQAKIRQIEQ NAAASGSKDA  60
   61 KRQEALRKRR EEEKRAAEAA KAEVAALFNA IPKKQTPQNF LTRKEEVKES QKIDLYSDVR 120
  121 DQQTDLPLEK RPWINTDIVC KFFLEACETG KYGWLWQCPN GNMTCIYKHA LP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.43
Match: 2d9nA
Description: No description for 2d9nA was found.

Predicted Domain #2
Region A:
Residues: [173-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGYVLSRDKK KDDTKEEISL EAFIEIERHR LGPNLTPVTE ENFKKWSDGR RDRILKQAEE  60
   61 RRSNRAVGRS NLSGREYFES NKDKTHEVVG DEEDWDFSAL RRETEALAKA QDATAPIVSV 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.604 N/A N/A g.84.1 Description not found.
View Download 0.597 N/A N/A a.22.1 Histone-fold
View Download 0.554 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.554 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.550 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.550 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.532 N/A N/A a.24.3 Cytochromes
View Download 0.532 N/A N/A a.24.3 Cytochromes
View Download 0.484 N/A N/A a.22.1 Histone-fold
View Download 0.446 N/A N/A a.22.1 Histone-fold


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle