| Protein: | sec39 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 769 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec39.
| Description | E-value | Query Range |
Subject Range |
|
|
730.0 | [0..50] | [672..42] |
|
|
717.0 | [0..50] | [672..45] |
|
|
693.0 | [0..58] | [672..51] |
|
|
687.0 | [0..58] | [672..51] |
|
|
654.0 | [0..50] | [672..45] |
|
|
475.0 | [0..50] | [767..45] |
|
|
463.0 | [0..51] | [677..46] |
|
|
446.0 | [0..50] | [767..45] |
|
|
385.0 | [0..354] | [764..411] |
|
Region A: Residues: [1-297] |
1 11 21 31 41 51
| | | | | |
1 MNEDKLESKW LFSLTESQKL YLLISLIINK KLPEAKFVYK LLDYTKGNWL SLLLRFLPET 60
61 TDPECYIPYI DIDSHYGNIK ASVNDIEPIV LPDEELCQLR LTNMKLWNCK LPSLKDEAEF 120
121 YSLFSKKIVE ETDLVDLAYQ LTKNSQAPAE IQQWNSGTFT VFHKLSQFAA VPINLEEMEA 180
181 ATIRDVISLA FPVLDSKNCV FIMDEIITVF INNSSNDPNL ISENWDFVWK KLLQLVKTDG 240
241 LAVVHTLVLN WNTIEPKLFL KLAKVALASC YISDDSSLYS VSLARDITEA IQNKLNF
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [298-383] |
1 11 21 31 41 51
| | | | | |
1 SDVNFGDLLK KPHDFSADGL LSLQNDLTTP SSLSTSLLME ITKAIALLTQ LKVPAPTFKT 60
61 SVSISCSNFD SQIKYLENVL LNALGT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.814 | a.46.1 | Methionine synthase domain |
| View | Download | 0.808 | a.46.1 | Methionine synthase domain |
| View | Download | 0.794 | a.118.1 | ARM repeat |
| View | Download | 0.794 | a.118.1 | ARM repeat |
| View | Download | 0.668 | a.7.16 | Description not found. |
| View | Download | 0.642 | a.46.1 | Methionine synthase domain |
| View | Download | 0.635 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.578 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.573 | a.46.1 | Methionine synthase domain |
| View | Download | 0.499 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.319 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.292 | a.3.1 | Cytochrome c |
| View | Download | 0.256 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.236 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.208 | a.231.1 | Description not found. |
|
Region A: Residues: [384-543] |
1 11 21 31 41 51
| | | | | |
1 IQSPDYKDWH DLYSYIERFK QLSLFFLNIS EDAISVVFLK QMLQEKSFLA LKQMRNEIGL 60
61 KDIEPKVLID CLKTSFYENF RAASNMNKNR GKLALACKVL DVFVDCEPTI DLRRRLNSLV 120
121 NACSLIQPFK LILEPGKPLS PSLVEANLNP DKLIKTIFSQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [544-769] |
1 11 21 31 41 51
| | | | | |
1 NPSAYTLYDD ILALDIELHK AAGDFDYSQV FTELRRITEH MITLTIDVSL EKDDIEYAKQ 60
61 IVEDRLMTLA EASEDVKFFL YEIAYKIGKF PSNHPNAKVI RLDMLQIAIA NAPRQKLDEV 120
121 VSYWTDFQSN SKVLEENLNT TDVEFHSSKK IKDYEDLEDA NFDEEWSKAA DLMSDDPENQ 180
181 VLYEGNLNSS LSLNEDPSVS DENLTQKVTS KLTNGLGWVL GVPPRK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
