YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBP4H10.16c
Organism:	Schizosaccharomyces pombe
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP4H10.16c.

Description	E-value	Query Range	Subject Range
gi\|38109818, gi\|... - gi\|39951106\|ref\|XP_363352.1\| hypothetical protein MG01278.4 [Magnaporthe grisea 70-15], gb\|EAA55627....	416.0	[0..2]	[286..929]
gi\|46134267, gi\|... - gi\|46134267\|ref\|XP_389449.1\| hypothetical protein FG09273.1 [Gibberella zeae PH-1], gi\|42554071\|gb\|E...	406.0	[0..2]	[286..875]
gi\|40882311 - gi\|40882311\|emb\|CAF06134.1\| related to growth regulation protein WHI2 [Neurospora crassa]	402.0	[0..2]	[286..9]
gi\|28921764, gi\|... - gi\|32406996\|ref\|XP_324102.1\| hypothetical protein [Neurospora crassa], gi\|28921764\|gb\|EAA31042.1\| hy... gi\|85067707 - gi\|85067707\|ref\|XP_960278.1\| hypothetical protein [Neurospora crassa OR74A]	394.0	[0..2]	[282..1003]
gi\|40741292, gi\|... - gi\|67528230\|ref\|XP_661925.1\| hypothetical protein AN4321.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	394.0	[0..2]	[286..895]
gi\|116202281, gi... - gi\|88177543\|gb\|EAQ85011.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11620...	385.0	[0..2]	[286..234]
gi\|115400799, gi... - gi\|115400799\|ref\|XP_001215988.1\| hypothetical protein ATEG_06810 [Aspergillus terreus NIH2624], gi\|1...	373.0	[0..2]	[282..882]
gi\|169774003 - gi\|169774003\|ref\|XP_001821470.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83769331 - gi\|83769331\|dbj\|BAE59468.1\| unnamed protein product [Aspergillus oryzae]	367.0	[0..2]	[282..9]
gi\|111064647 - gi\|111064647\|gb\|EAT85767.1\| hypothetical protein SNOG_07116 [Phaeosphaeria nodorum SN15]	361.0	[0..2]	[286..841]
gi\|77022534, gi\|... - gi\|77022534\|ref\|XP_888711.1\| hypothetical protein CaO19_7036 [Candida albicans SC5314], gi\|68471105\|... gi\|76573524 - gi\|76573524\|dbj\|BAE44608.1\| hypothetical protein [Candida albicans]	315.0	[0..13]	[286..43]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVITQAQEI PTVAANPDFN YEGDPIIIQL CDRDTVFELS RDQLLGLPES ILMCLFPRGL  60
   61 LLDYEIQECQ LTQRPLIFQT ADFDPSLLQY ILNYFQMAEN RTANDEIALS PPPPSFPGKC 120
  121 GIILLKEDIE FFILPPISPT TNIAIEVSPN DLLKLKQRVA QRLLQQKKIF DCLHLENSTS 180
  181 EGSAEKNLVR MLCYSGFHED DEWKRRIQEP HRACITSVTL TNLDFSADQG PVSDPEYFPV 240
  241 YHKLLLFWQK PARKCWWDSS TSITYNGIEF ATWVRRVWTL ELAVLGANTY ETAAV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.13
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits