| Protein: | ubx3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 410 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubx3.
| Description | E-value | Query Range |
Subject Range |
|
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278.0 | [0..2] | [409..4] |
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277.0 | [0..2] | [409..4] |
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277.0 | [0..4] | [410..6] |
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277.0 | [0..2] | [409..4] |
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276.0 | [0..2] | [409..4] |
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276.0 | [0..2] | [409..4] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MDREDILKEF CNRNNIDVSQ GRFFLESTNW NYELATALLH EVIPPEEDHG LQPSSDVSKV 60
61 PEVTGSSSGI SGGDQQPPRP LQRQQNT
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.543 | N/A | N/A | a.277.1 | Description not found. |
| View | Download | 0.521 | N/A | N/A | a.42.1 | MDM2 |
| View | Download | 0.446 | N/A | N/A | a.42.1 | MDM2 |
| View | Download | 0.417 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.363 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.344 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.334 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.314 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.247 | N/A | N/A | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.231 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [88-155] |
1 11 21 31 41 51
| | | | | |
1 QGQGMKSGTA SKKFATLRDL EGNDESAEEK SHLFTGGEKS GLSVEDGDPD PKKQLVRDIL 60
61 EKARQHTI
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.585 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.520 | d.58.17 | Metal-binding domain |
| View | Download | 0.511 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.509 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.503 | d.58.17 | Metal-binding domain |
| View | Download | 0.490 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.482 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.465 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.419 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.410 | d.58.17 | Metal-binding domain |
|
Region A: Residues: [156-283] |
1 11 21 31 41 51
| | | | | |
1 SPLDEQDSGP SSLASSWASV GQRLGTENEA SGSTTPVTQS GPPRENPPTE SQPEKPLRRT 60
61 LYFWRNGFSV DDGPIYTYDD PANQEMLRYI NSGRAPLHLL GVSMNQPIDV VVQHRMDEDY 120
121 VAPFKPFS
|
| Detection Method: | |
| Confidence: | 11.522879 |
| Match: | 1vazA |
| Description: | Solution structures of the p47 SEP domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [284-410] |
1 11 21 31 41 51
| | | | | |
1 GKGQRLGSTY MQPRMSQMPG GLYTDTSTSS SVPINVKPNS TTPHASLQID ENKPTTRIQV 60
61 RLSNGGRTVL TVNLSHTLHD IYEAVRAVSP GNFILSVPFP AKTLEDDPSV TVEAASLKNA 120
121 SLVQKSL
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| Detection Method: | |
| Confidence: | 23.154902 |
| Match: | 1s3sG |
| Description: | Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C |
Matching Structure (courtesy of the PDB): |
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