YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ubx3
Organism: Schizosaccharomyces pombe
Length: 410 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubx3.

Description E-value Query
Range
Subject
Range
NSF1C_RAT - NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1
278.0 [0..2] [409..4]
NSF1C_MOUSE - NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1
277.0 [0..2] [409..4]
gi|27735468, gi|... - gi|27735468|gb|AAH41297.1| Nsfl1c protein [Xenopus laevis], gi|148235839|ref|NP_001080187.1| p47 [Xe...
277.0 [0..4] [410..6]
gi|123993027, gi... - gi|124000007|gb|ABM87512.1| NSFL1 (p97) cofactor (p47) [synthetic construct], gi|123993027|gb|ABM841...
NSF1C_PONAB - NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1
NSFL1C - NSFL1 (p97) cofactor (p47)
NSF1C_PONPY - NSFL1 cofactor p47 - Pongo pygmaeus (Orangutan)
gi|114680495, gi... - gi|114680497|ref|XP_525244.2| PREDICTED: p47 protein isoform 10 [Pan troglodytes], gi|114680495|ref|...
277.0 [0..2] [409..4]
NSF1C_BOVIN - NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1
276.0 [0..2] [409..4]
gi|114680493 - gi|114680493|ref|XP_001154020.1| PREDICTED: p47 protein isoform 5 [Pan troglodytes]
276.0 [0..2] [409..4]

Back

Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDREDILKEF CNRNNIDVSQ GRFFLESTNW NYELATALLH EVIPPEEDHG LQPSSDVSKV  60
   61 PEVTGSSSGI SGGDQQPPRP LQRQQNT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.543 N/A N/A a.277.1 Description not found.
View Download 0.521 N/A N/A a.42.1 MDM2
View Download 0.446 N/A N/A a.42.1 MDM2
View Download 0.417 N/A N/A a.39.1 EF-hand
View Download 0.363 N/A N/A a.77.1 DEATH domain
View Download 0.344 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.334 N/A N/A a.60.1 SAM/Pointed domain
View Download 0.314 N/A N/A a.77.1 DEATH domain
View Download 0.247 N/A N/A a.48.3 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View Download 0.231 N/A N/A a.4.5 "Winged helix" DNA-binding domain

Predicted Domain #2
Region A:
Residues: [88-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGQGMKSGTA SKKFATLRDL EGNDESAEEK SHLFTGGEKS GLSVEDGDPD PKKQLVRDIL  60
   61 EKARQHTI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.585 d.51.1 Eukaryotic type KH-domain (KH-domain type I)
View Download 0.520 d.58.17 Metal-binding domain
View Download 0.511 a.60.4 DNA repair protein Rad51, N-terminal domain
View Download 0.509 d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.503 d.58.17 Metal-binding domain
View Download 0.490 d.51.1 Eukaryotic type KH-domain (KH-domain type I)
View Download 0.482 d.58.3 Protease propeptides/inhibitors
View Download 0.465 d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.419 d.51.1 Eukaryotic type KH-domain (KH-domain type I)
View Download 0.410 d.58.17 Metal-binding domain

Predicted Domain #3
Region A:
Residues: [156-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPLDEQDSGP SSLASSWASV GQRLGTENEA SGSTTPVTQS GPPRENPPTE SQPEKPLRRT  60
   61 LYFWRNGFSV DDGPIYTYDD PANQEMLRYI NSGRAPLHLL GVSMNQPIDV VVQHRMDEDY 120
  121 VAPFKPFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 1vazA
Description: Solution structures of the p47 SEP domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [284-410]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKGQRLGSTY MQPRMSQMPG GLYTDTSTSS SVPINVKPNS TTPHASLQID ENKPTTRIQV  60
   61 RLSNGGRTVL TVNLSHTLHD IYEAVRAVSP GNFILSVPFP AKTLEDDPSV TVEAASLKNA 120
  121 SLVQKSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.154902
Match: 1s3sG
Description: Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle