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View Structure Prediction Details

Protein: sif1
Organism: Schizosaccharomyces pombe
Length: 257 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sif1.

Description E-value Query
Range
Subject
Range
gi|28925201, gi|... - gi|32413104|ref|XP_327032.1| predicted protein [Neurospora crassa], gi|28925201|gb|EAA34282.1| predi...
gi|85110557 - gi|85110557|ref|XP_963518.1| hypothetical protein NCU06746 [Neurospora crassa OR74A]
154.0 [0..4] [106..15]
gi|38102617, gi|... - gi|39973521|ref|XP_368151.1| hypothetical protein MGG_01093 [Magnaporthe grisea 70-15], gb|EAA49435....
113.0 [0..5] [87..15]
gi|111063840 - gi|111063840|gb|EAT84960.1| hypothetical protein SNOG_07494 [Phaeosphaeria nodorum SN15]
70.0 [0..7] [246..23]
gi|116199519, gi... - gi|88179194|gb|EAQ86662.1| predicted protein [Chaetomium globosum CBS 148.51], gi|116199519|ref|XP_0...
69.0 [0..12] [134..24]
gi|46123773, gi|... - gi|46123773|ref|XP_386440.1| hypothetical protein FG06264.1 [Gibberella zeae PH-1], gi|42551116|gb|E...
68.0 [0..10] [89..24]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTASEQARL RRERRLNKIK QGGASRINQI LGQNSDDSQS DVRATASEEA VHSETATPVT  60
   61 PMSSGFMEKR DDTFNADQVE YLPSQDYHNL ESSPFKLQCD 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPYNVPPENM FNQNPDFANF FQAMLQSAKE GSDTNFQGEN EQIPQATAPL KNLVEKYAHL  60
   61 LAISIVVIVC YFKHLPLLPW TFTVEACLFS IQFVLDRNNG PSYSLLASLA SQLPPPYGAM 120
  121 IRHTTSYVPY FTQLITDACM TIFALGLCCY FYPSLVY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle