YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1711.11
Organism:	Schizosaccharomyces pombe
Length:	390 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1711.11.

Description	E-value	Query Range	Subject Range
gi\|109077219 - gi\|109077219\|ref\|XP_001096681.1\| PREDICTED: similar to sorting nexin associated golgi protein 1 [Mac...	253.0	[0..3]	[388..277]
gi\|114600301 - gi\|114600301\|ref\|XP_001148882.1\| PREDICTED: similar to sorting nexin associated golgi protein 1 isof...	253.0	[0..3]	[388..277]
gi\|116284082, gi... - gi\|157057545\|ref\|NP_001096045.1\| sorting nexin 18 isoform a [Homo sapiens], gi\|119575289\|gb\|EAW54894...	253.0	[0..3]	[388..277]
gi\|109464394, gi... - gi\|109466059\|ref\|XP_001075253.1\| PREDICTED: similar to sorting nexin associated golgi protein 1 [Rat...	252.0	[0..3]	[388..488]
gi\|73953727 - gi\|73953727\|ref\|XP_853706.1\| PREDICTED: similar to sorting nexin associated golgi protein 1 isoform ...	251.0	[0..3]	[388..272]
gi\|187950791, gi... - gi\|91598596\|ref\|NP_570614.2\| sorting nexin 18 [Mus musculus], gi\|26342577\|dbj\|BAC34945.1\| unnamed pr...	246.0	[0..3]	[388..268]
gi\|114194752, gi... - gi\|115389702\|ref\|XP_001212356.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	241.0	[0..1]	[387..71]

Back

Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKCTIKNEQ IETLRSGDTF VSYEIETESD LPVFEDKKFS VRRRYKDFEM LHNILSHDYN  60
   61 GYAIPPLPRK YTVSSFSGGS LSPIFIARRM QSLQTFLDRC STHPVISNSM HMYQFLENNS 120
  121 WKSYYHNAWM QSENT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	2cskA
Description:	Solution structure of PX domain from human SNX12
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [136-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSKGNNVSGG IESSIQNLDP YAQSLYETAK QLLQNADTDL SKLEKTCVQY MNSVQNFPTD  60
   61 IPVPSNLSIS NLDVVSVEFK RLKRNSIFLI NSFHSKVITS IQDLEDYMVV FKSLIKSREQ 120
  121 KVKQFEHFQQ IVQSNSNNPD QSSRSDPNFV EATPVVQQTP ELKPSPNTTI RTSSLFSIPK 180
  181 FFKKKRYSLG QDDANPMELL QLSFQELCIF NEKLEQELNF LRERIDVEMR KTLQMVCDCH 240
  241 VEYFSGILEQ HAVKE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.01
Match:	2ficA
Description:	No description for 2ficA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits