YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1020.09
Organism:	Schizosaccharomyces pombe
Length:	399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1020.09.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	340.0	[0..3]	[398..1215]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	336.0	[0..2]	[399..906]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	333.0	[0..2]	[399..1044]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	332.0	[0..3]	[399..608]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	329.0	[0..3]	[399..842]

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Predicted Domain #1

Region A:
Residues: [1-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNCVNSFED QKDDLVHKKK SQNFGYVCGS INLGTNVIAQ SPTKPLNFFH SSRWSPDGST  60
   61 ILSLTEDQCL NCWNVPFSDL SKKADGPLNF SKHLSYKYQS PETVYSYSWY SRMKLDDPSS 120
  121 NLFAVSSRDQ PIKLINFTTG KNKASYHMID HQERYQGSHC LQFTNDGEYL IAGDKNCLHH 180
  181 FNIRTGCKEP VMTTVTHGYK VPLWEFSLKG IQSCFSLNPM DSKTLAVGTY SNRVGIYNDC 240
  241 GRRPCQLEFS IERGNGVTHL QWCEDGEKLY VGSRCSDKIE VWDIRYVRDM VYALEGHRGD 300
  301 TNQRILFDTD KKDEILAGGT DGSIRRWRNK DLVEETHVTG NYDLTVNTVQ ANPINMQIKC 360
  361 VCYGNRIYKY EKDESEEEDE SKEKDLWTGT VSALQVWMD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	2ovpB
Description:	No description for 2ovpB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits