YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC409.15
Organism:	Schizosaccharomyces pombe
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC409.15.

Description	E-value	Query Range	Subject Range
gi\|44983704 - gi\|44983704\|gb\|AAS52803.1\| AER119Wp [Ashbya gossypii ATCC 10895] gi\|45190725, gi\|... - gi\|45190725\|ref\|NP_984979.1\| AER119Wp [Ashbya gossypii ATCC 10895], gi\|44983704\|gb\|AAS52803.1\| AER11...	187.0	[0..2]	[179..22]
orf19.10515, orf... - orf19.2998 CGDID:CAL0006160 Assembly 19, Contig19-10163 (141690, 141061) CDS, reverse complemented, ... gi\|68469419, gi\|... - gi\|68469419\|ref\|XP_721224.1\| hypothetical protein CaO19.10515 [Candida albicans SC5314], gi\|68468875...	184.0	[0..2]	[179..20]
TSR2_MOUSE - Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus GN=Tsr2 PE=1 SV=1	177.0	[0..1]	[178..1]
TSR2 - TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	177.0	[0..1]	[178..1]
gi\|109130877 - gi\|109130877\|ref\|XP_001090023.1\| PREDICTED: hypothetical protein [Macaca mulatta]	176.0	[0..1]	[178..1]
TSR2 - Protein with a potential role in pre-rRNA processing	175.0	[0..1]	[179..66]
gi\|46128735, gi\|... - gi\|46128735\|ref\|XP_388921.1\| hypothetical protein FG08745.1 [Gibberella zeae PH-1], gi\|42549599\|gb\|E...	175.0	[0..5]	[179..101]
gi\|57111799 - gi\|57111799\|ref\|XP_538053.1\| PREDICTED: similar to CG14543-PA [Canis familiaris]	171.0	[0..1]	[178..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDDPSKRLT YFEYAVGVLL CSWPVMKQAV EEEWADVDTA DKRDWMAGVL VDYITVTSDV  60
   61 EAWDVEELIL QVLQDEFNVG SIEDDSPYIL AQDLVNVWKA ACEDNYEPIR EIHERLGKQL 120
  121 LEKEEGKEKT REESNPPVLV EDETIVDAED GGAAQNQQEK QQGPIVDDDG FTVVQKRRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits