YRC Public Data Repository - Protein Structure Prediction

Protein:	srb11
Organism:	Schizosaccharomyces pombe
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srb11.

Description	E-value	Query Range	Subject Range
gi\|114599953 - gi\|114599953\|ref\|XP_517728.2\| PREDICTED: cyclin B1 [Pan troglodytes]	220.0	[0..5]	[220..280]
gi\|60655945 - gi\|60655945\|gb\|AAX32536.1\| cyclin B1 [synthetic construct]	216.0	[0..5]	[220..177]
CG21_EMENI - G2/mitotic-specific cyclin-B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL... CG21_EMENI - G2/mitotic-specific cyclin-B OS=Emericella nidulans GN=nimE PE=2 SV=1	216.0	[0..4]	[226..214]
gi\|7438501, gi\|4... - pir\|\|T10526 cyclin B1c-ll - yellow lupine, gi\|4884728\|gb\|AAD31790.1\|AF126107_1 mitotic cyclin B1-3 [...	216.0	[0..5]	[224..199]
CCNB1, CGB1 - chorionic gonadotropin, beta polypeptide 1, cyclin B1 gi\|123990181 - gi\|123990181\|gb\|ABM83901.1\| cyclin B1 [synthetic construct]	216.0	[0..5]	[220..177]
gi\|73949659, gi\|... - gi\|73988334\|ref\|XP_851164.1\| PREDICTED: similar to G2/mitotic-specific cyclin B1 isoform 1 [Canis fa...	215.0	[0..5]	[220..169]
gi\|1835260 - gi\|1835260\|emb\|CAA99990.1\| mitotic cyclin [Sesbania rostrata]	215.0	[0..5]	[224..195]
CCB21_ORYSJ - Cyclin-B2-1 OS=Oryza sativa subsp. japonica GN=CYCB2-1 PE=1 SV=2	215.0	[0..5]	[223..161]
gi\|85111257 - gi\|85111257\|ref\|XP_963851.1\| G2/mitotic-specific cyclin-B [Neurospora crassa OR74A] gi\|32423039, gi\|... - gi\|32423039\|ref\|XP_331957.1\| hypothetical protein [Neurospora crassa], gi\|28925592\|gb\|EAA34615.1\| G2...	214.0	[0..5]	[227..247]
gi\|109077471 - gi\|109077471\|ref\|XP_001091170.1\| PREDICTED: cyclin B1 isoform 2 [Macaca mulatta]	214.0	[0..5]	[220..176]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANYWASSQ LTQLFLSTDL ESLEPTCLSK DTIYQWKVVQ TFGDRLRLRQ RVLATAIVLL  60
   61 RRYMLKKNEE KGFSLEALVA TCIYLSCKVE ECPVHIRTIC NEANDLWSLK VKLSRSNISE 120
  121 IEFEIISVLD AFLIVHHPYT SLEQAFHDGI INQKQLEFAW SIVNDSYASS LCLMAHPHQL 180
  181 AYAALLISCC NDENTIPKLL DLIKSTDAFK VILCVQRIIS IYYFEDIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.221849
Match:	1zp2A
Description:	Structure of the Mediator subunit cyclin C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits