YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC543.10
Organism:	Schizosaccharomyces pombe
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC543.10.

Description	E-value	Query Range	Subject Range
GET1_NEUCR - Protein get-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 98... GET1_NEUCR - Protein get-1 OS=Neurospora crassa GN=get-1 PE=3 SV=1	225.0	[0..1]	[170..1]
GET1_MAGO7 - Protein GET1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=GET1 PE=3 SV=2	224.0	[0..1]	[170..1]
gi\|42549933, gi\|... - gi\|46117106\|ref\|XP_384571.1\| hypothetical protein FG04395.1 [Gibberella zeae PH-1], gi\|42549933\|gb\|E...	218.0	[0..1]	[170..1]
GET1_CHAGB - Protein GET1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 197... GET1_CHAGB - Protein GET1 OS=Chaetomium globosum GN=GET1 PE=3 SV=1	193.0	[0..1]	[170..1]
gi\|67528288, gi\|... - gi\|67528288\|ref\|XP_661946.1\| hypothetical protein AN4342.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	192.0	[0..1]	[170..1]
GET1_ASPFC - Protein get1 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=get1 PE=3 SV=1 GET1_ASPFU - Protein get1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=get... GET1_ASPFU - Protein get1 OS=Aspergillus fumigatus GN=get1 PE=3 SV=1	190.0	[0..1]	[170..1]
GET1_CANAL - Golgi to ER traffic protein 1 OS=Candida albicans GN=GET1 PE=3 SV=1 GET1_CANAL - Golgi to ER traffic protein 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=GET1 PE=3 SV=1	189.0	[0..1]	[168..3]
GET1_ASPFN - Protein get1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 1... GET1_ASPOR - Protein get1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=get1 PE=3 SV=1 GET1_ASPOR - Protein get1 OS=Aspergillus oryzae GN=get1 PE=3 SV=1	184.0	[0..1]	[169..1]
gi\|111494096 - gi\|111494096\|gb\|AAI11394.1\| WRB protein [Homo sapiens]	181.0	[0..35]	[170..30]
gi\|115398351, gi... - gi\|115398351\|ref\|XP_001214767.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	175.0	[0..1]	[170..1]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDLIISTIL LSLFIHFFDK FAKKRTIDGA YRIYVSVSNN KDLKKNKEIL EQLLTVKKEL  60
   61 NATSSQDQFA KWARLNRKYE QLSQEWEKQS ANVKIFQDTF KRVLSLFLWI LTRGFRFYIQ 120
  121 FKESKTPVFF LPAFLLPSWA LWVLSLPRSI YGSVSLTVWN FAVQKTISGI F

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	96.236572
Match:	PF04420.5
Description:	No description for PF04420.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits