YRC Public Data Repository - Protein Structure Prediction

Protein:	cog6
Organism:	Schizosaccharomyces pombe
Length:	675 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cog6.

Description	E-value	Query Range	Subject Range
gi\|26006255 - gi\|26006255\|dbj\|BAC41470.1\| mKIAA1134 protein [Mus musculus]	763.0	[0..16]	[643..26]
COG6_BOVIN - Conserved oligomeric Golgi complex subunit 6 OS=Bos taurus GN=COG6 PE=2 SV=1	760.0	[0..16]	[634..27]
gi\|73993301 - gi\|73993301\|ref\|XP_534488.2\| PREDICTED: similar to component of oligomeric golgi complex 6 [Canis fa...	759.0	[0..22]	[645..33]
COG6_RAT - Conserved oligomeric Golgi complex subunit 6 OS=Rattus norvegicus GN=Cog6 PE=2 SV=1	758.0	[0..16]	[634..27]
gi\|114651338 - gi\|114651338\|ref\|XP_509639.2\| PREDICTED: component of oligomeric golgi complex 6 isoform 2 [Pan trog... sp\|Q9Y2V7\|COG6_H... - Conserved oligomeric Golgi complex subunit 6 OS=Homo sapiens GN=COG6 PE=1 SV=2 VAR_048760, Conserved...	755.0	[0..16]	[634..27]
COG6 - component of oligomeric golgi complex 6	755.0	[0..16]	[634..27]
gi\|109120537 - gi\|109120537\|ref\|XP_001088372.1\| PREDICTED: similar to component of oligomeric golgi complex 6 isofo...	750.0	[0..16]	[634..27]
gi\|49522362, gi\|... - gi\|54262226\|ref\|NP_001005812.1\| component of oligomeric golgi complex 6 [Xenopus (Silurana) tropical...	740.0	[0..21]	[634..23]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVKSKHGHI KSNPEESLLF RNSVSKNIAQ LSSINYADRN VQAALEQLSE RKFKNEREAR  60
   61 KQLPFEVFSD LIWTNGSIIK ELSELSSQTL SVQSQLLKVK NSIDSYKNEW SKKTNDAQIL 120
  121 LNSYETFCEE EALIEEKLKN IEIFEKNFVI MDDDLIHLTS STDV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	1ciiA
Description:	COLICIN IA
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [165-675]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDRFYLILDK AQEIHDSSDS LFASLSGFVE YSSFEEIVKK MSRYIEAAFE KLFRCVQTEL  60
   61 SDPQTAQTLE ANSHLKKAFT KLFSEPTMVN KSINLIVQAR QQILSTAYLT ALTRGDFLSS 120
  121 SRPIELSAPD TVRFIGDLLA WIHQTIVNEK ELVEALFAAR KRQIQLNPFP PWDVPNVLED 180
  181 QMNSLLDGSL YGICRPLSSR AQTSVLDLSD IVRLYNVIEI LGFYREAFSK IVHDECIILR 240
  241 IIKTLEDFTY QRMKTVLDDE LYTISNTNLS ITDDLLPPDF VTTFLRNANS IFKIRGASLS 300
  301 VQGVDELPFK MLFMQLFDRI LEICAAMTED VRPPYKGIIL MLNVLDSCTN YVGRYTFLNE 360
  361 LFEYLQEKTT YYKNNLTTLL NNDYIAQAGL SDLLQKIADT TDDKQALKNY LHSWKWDQQI 420
  421 DKFSTFIRKT LSETIDNLQL LTSPIVTNQV LKETAISFVG AIETVDKALE LSNLERRWPL 480
  481 STEELLIAMN VDSMDTLSDI GQSDIDNLSV N

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.34
Match:	2b7mA
Description:	Crystal Structure of the S. cerevisiae Exocyst Component Exo70p
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits