YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBP35G2.02
Organism:	Schizosaccharomyces pombe
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP35G2.02.

Description	E-value	Query Range	Subject Range
gi\|27820018 - gi\|27820018\|gb\|AAL28536.2\| GM14633p [Drosophila melanogaster]	264.0	[0..1]	[206..20]
gi\|1078903 - gi\|1078903\|pir\|\|S44654 ZK353.1 protein - Caenorhabditis elegans	263.0	[0..1]	[207..341]
gi\|82540198 - gi\|82540198\|ref\|XP_724436.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi\|23479072 - gi\|23479072\|gb\|EAA16001.1\| expressed protein [Plasmodium yoelii yoelii]	261.0	[0..1]	[203..1]
AGAP010237-PA, A... - \|protein_coding\|3R:51361619:51362430:1\|gene:AGAP010236, \|protein_coding\|3R:51366442:51367253:1\|gene:... gi\|21301790, gi\|... - gi\|31236511\|ref\|XP_319425.1\| ENSANGP00000014230 [Anopheles gambiae str. PEST], gi\|21301790\|gb\|EAA139...	258.0	[0..1]	[202..1]
gi\|56500336 - gi\|56500336\|emb\|CAI04696.1\| conserved hypothetical protein [Plasmodium berghei] gi\|68075277 - gi\|68075277\|ref\|XP_679556.1\| hypothetical protein [Plasmodium berghei strain ANKA]	258.0	[0..1]	[207..1]
gi\|109477511, gi... - gi\|109477511\|ref\|XP_001068778.1\| PREDICTED: similar to thioredoxin family Trp26 [Rattus norvegicus],...	258.0	[0..5]	[194..55]
gi\|39591683, gi\|... - gi\|39591683\|emb\|CAE71261.1\| Hypothetical protein CBG18143 [Caenorhabditis briggsae], gi\|187025178\|em... gi\|157775399 - gi\|157775399\|ref\|XP_001665765.1\| hypothetical protein CBG18143 [Caenorhabditis briggsae AF16]	255.0	[0..1]	[207..1]
gi\|110742984, gi... - gi\|29028814\|gb\|AAO64786.1\| At2g25950 [Arabidopsis thaliana], gi\|21593506\|gb\|AAM65473.1\| unknown [Ara...	251.0	[0..3]	[198..2]

Back

Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGPHHCSAD CDEHPFESGP NDTLYSCIRK ESIVTLNEAV PDSGKLVFKP WDLRYDDTDI  60
   61 VESDADDQLL FQVPFAGAAT LKSILVRIFP NETAPHSFSL FPNRTDLDFD TIGDVQATET 120
  121 FEFPLTFEGS HIFEFPVKTR LYQNLQNLNI FFTKSDGSDD PTQIAYIGLR GSFVPFKGDP 180
  181 VVTIYEATPR PSDHPKVNQE EVFRSYY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.09691
Match:	1wwyA
Description:	Solution structure of the DUF1000 domain of a thioredoxin-like protein 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits