YRC Public Data Repository - Protein Structure Prediction

Protein:	sdh3
Organism:	Schizosaccharomyces pombe
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sdh3.

Description	E-value	Query Range	Subject Range
gi\|46444509, gi\|... - gi\|68466950\|ref\|XP_722390.1\| hypothetical protein CaO19.9055 [Candida albicans SC5314], gi\|68466667\|... orf19.1480, orf1... - orf19.1480 CGDID:CAL0004732 Assembly 19, Contig19-10119 (68521, 69051) CDS, translated using codon t... gi\|238881974 - gi\|238881974\|gb\|EEQ45612.1\| conserved hypothetical protein [Candida albicans WO-1]	166.0	[0..11]	[180..6]
gi\|70997878, gi\|... - gi\|70997878\|ref\|XP_753671.1\| succinate dehydrogenase cytochrome b560 subunit [Aspergillus fumigatus ... gi\|159126596 - gi\|159126596\|gb\|EDP51712.1\| succinate dehydrogenase cytochrome b560 subunit [Aspergillus fumigatus A...	159.0	[0..3]	[180..36]
gi\|2137070 - gi\|2137070\|pir\|\|I48085 integral membrane protein CII-3 - Chinese hamster (fragment)	159.0	[0..14]	[178..3]
gi\|57111445 - gi\|57111445\|ref\|XP_536140.1\| PREDICTED: similar to succinate dehydrogenase complex, subunit C precur...	158.0	[0..16]	[180..1]
gi\|29420823 - gi\|29420823\|dbj\|BAC66633.1\| succinate dehydrogenase cytochrome b560 subunit [Coprinopsis cinerea]	157.0	[0..1]	[179..1]
gi\|67517322 - gi\|67517322\|gb\|AAY68233.1\| cytochrome B-560 subunit of succinate dehydrogenase [Emericella nidulans] gi\|67903612, gi\|... - gi\|67903612\|ref\|XP_682062.1\| hypothetical protein AN8793.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	155.0	[0..3]	[180..16]
gi\|115400139, gi... - gi\|115400139\|ref\|XP_001215658.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	151.0	[0..3]	[180..16]
C560_BOVIN - Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Bos taurus GN=SDHC PE=1 SV=2	150.0	[0..16]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFATRSFCLS SSLFRPAAQL LRPAGRSTLR NVWRRSIATE HLTQTEANSR LASQRVHRPN  60
   61 SPHLTIYEPQ LTWYLSSLHR ITGCVVAGTL YAFAMGYLVA PLAGYSLDTA TISGLIQQVP 120
  121 TWIKVPAKFV ISYPLTFHIF NGIRHLIWDT TKELSLKGVY RTGYAVLALS VLTSGYFAMI 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1zoyC
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits