YRC Public Data Repository - Protein Structure Prediction

Protein:	sst2
Organism:	Schizosaccharomyces pombe
Length:	435 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sst2.

Description	E-value	Query Range	Subject Range
gi\|17390801 - gi\|17390801\|gb\|AAH18343.1\| Stambpl1 protein [Mus musculus]	333.0	[0..7]	[433..8]
gi\|165970954, gi... - gi\|169234828\|ref\|NP_001108520.1\| hypothetical protein LOC687696 [Rattus norvegicus], gi\|165970954\|gb...	331.0	[0..7]	[433..23]
STAMBPL1 - STAM binding protein-like 1	321.0	[0..7]	[433..23]
gi\|114631679, gi... - gi\|114631681\|ref\|XP_521549.2\| PREDICTED: associated molecule with the SH3 domain of STAM (AMSH) like...	321.0	[0..7]	[433..23]
STALP_PONAB - AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1 STALP_PONPY - AMSH-like protease - Pongo pygmaeus (Orangutan)	319.0	[0..7]	[433..23]
gi\|115497652, gi... - gi\|76654504\|ref\|XP_582671.2\| PREDICTED: similar to associated molecule with the SH3 domain of STAM (...	318.0	[0..7]	[433..23]
gi\|18000291 - gi\|18000291\|gb\|AAL54907.1\|AF164597_1 AMSH-like [Lapemis hardwickii]	306.0	[0..7]	[433..23]
gi\|50749486 - gi\|50749486\|ref\|XP_421657.1\| PREDICTED: similar to associated molecule with the SH3 domain of STAM (...	305.0	[0..7]	[433..592]
gi\|45360673, gi\|... - gi\|45360673\|ref\|NP_989010.1\| associated molecule with the SH3 domain of STAM (AMSH) like protein [Xe...	303.0	[0..7]	[433..21]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILQGSEAP LSYEEIASRA GAFDFNKNIP LKNWLRTSTT ISKQAHVYVS EHDYSNGVFL  60
   61 LFRYCELFMK CQKHPDAAAY KKELFDYYQG VRNALEEIEL IKPIVKEQYE QYQCQKNDLD 120
  121 DLKKLSMKDS QPSLEKPVSY VDEPILEQWA LSDLQILPPS STDLLSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	2a9uA
Description:	Structure of the N-terminal domain of Human Ubiquitin carboxyl-terminal hydrolase 8 (USP8)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [168-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSQKLSKSSS DLPQFDYPSL NSSPTFNSNL PISSSRFEKT SLSDSKLVSP EPLDDNKDIQ  60
   61 FIKKPIYTRT SEPRPK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [244-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAGTFKIHAY TEGGKPLRTI YLPKLLKKVF LDVVKPNTKK NLETCGILCG KLRQNAFFIT  60
   61 HLVIPLQEAT SDTCGTTDEA SLFEFQDKHN LLTLGWIHTH PTQTCFMSSV DLHTHCSYQL 120
  121 MLPEAIAIVM APSKNTSGIF RLLDPEGLQT IVKCRKPGLF HPHEGKVYTM VAQPGHVREI 180
  181 NSKLQVVDLR VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	2p87A
Description:	No description for 2p87A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits