YRC Public Data Repository - Protein Structure Prediction

Protein:	alo1
Organism:	Schizosaccharomyces pombe
Length:	461 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alo1.

Description	E-value	Query Range	Subject Range
gi\|221315135 - gi\|221315135\|ref\|ZP_03596940.1\| hypothetical protein BsubsN3_15562 [Bacillus subtilis subsp. subtili... GLCD_BACSU - Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168) GN=glcD PE=3 SV=1 gi\|221324335 - gi\|221324335\|ref\|ZP_03605629.1\| hypothetical protein BsubsS_15627 [Bacillus subtilis subsp. subtilis... GLCD_BACSU - Glycolate oxidase subunit glcD OS=Bacillus subtilis GN=glcD PE=3 SV=1 gi\|221320053 - gi\|221320053\|ref\|ZP_03601347.1\| hypothetical protein BsubsJ_15468 [Bacillus subtilis subsp. subtilis...	304.0	[0..1]	[457..13]
gi\|51977507, gi\|... - gi\|52144038\|ref\|YP_082789.1\| (S)-2-hydroxy-acid oxidase, subunit D [Bacillus cereus E33L], gi\|519775...	301.0	[0..5]	[457..17]
gi\|89151095, gi\|... - gi\|89200934\|ref\|ZP_01179683.1\| Glycolate oxidase subunit GlcD [Bacillus cereus subsp. cytotoxis NVH ...	301.0	[0..4]	[457..16]
gi\|47556735, gi\|... - gi\|47566182\|ref\|ZP_00237210.1\| glycolate oxidase, subunit glcD [Bacillus cereus G9241], gi\|47556735\|...	301.0	[0..5]	[457..17]
gi\|89157538, gi\|... - gi\|89204477\|ref\|ZP_01183054.1\| Glycolate oxidase subunit GlcD [Bacillus weihenstephanensis KBAB4], g...	300.0	[0..5]	[457..17]
gi\|229090349, gi... - gi\|229090349\|ref\|ZP_04221592.1\| Glycolate oxidase subunit [Bacillus cereus Rock3-42], gi\|228692932\|g... gi\|228944994, gi... - gi\|228944994\|ref\|ZP_04107355.1\| Glycolate oxidase subunit [Bacillus thuringiensis serovar monterrey ... gi\|218902503, gi... - gi\|218902503\|ref\|YP_002450337.1\| glycolate oxidase, subunit GlcD [Bacillus cereus AH820], gi\|2185358... gi\|195991992, gi... - gi\|196035315\|ref\|ZP_03102720.1\| glycolate oxidase, subunit GlcD [Bacillus cereus W], gi\|195991992\|gb... gi\|228926426, gi... - gi\|228926426\|ref\|ZP_04089498.1\| Glycolate oxidase subunit [Bacillus thuringiensis serovar pondicheri... gi\|49477180, gi\|... - gi\|49477180\|ref\|YP_035523.1\| (S)-2-hydroxy-acid oxidase, subunit D [Bacillus thuringiensis serovar k...	299.0	[0..5]	[457..17]
gi\|228899975, gi... - gi\|228899975\|ref\|ZP_04064213.1\| Glycolate oxidase subunit [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|228795337, gi... - gi\|228964353\|ref\|ZP_04125470.1\| Glycolate oxidase subunit [Bacillus thuringiensis serovar sotto str.... gi\|218544228, gi... - gi\|218896328\|ref\|YP_002444739.1\| glycolate oxidase, subunit GlcD [Bacillus cereus G9842], gi\|2185442... gi\|75760003, gi\|... - gi\|75760003\|ref\|ZP_00740070.1\| (S)-2-hydroxy-acid oxidase chain D [Bacillus thuringiensis serovar is...	299.0	[0..5]	[457..17]
gi\|227006774, gi... - gi\|227815863\|ref\|YP_002815872.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. CDC 684], ... gi\|177651493, gi... - gi\|177651493\|ref\|ZP_02934282.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0174], gi\|... gi\|229603580, gi... - gi\|229603580\|ref\|YP_002865814.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0248], gi... gi\|170706340, gi... - gi\|170706340\|ref\|ZP_02896801.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0389], gi\|... gi\|254682544 - gi\|254682544\|ref\|ZP_05146405.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. CNEVA-9066] gi\|254726206 - gi\|254726206\|ref\|ZP_05187988.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A1055] gi\|49178155, gi\|... - gi\|49184228\|ref\|YP_027480.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Sterne], gi\|49... gi\|190568728, gi... - gi\|190568728\|ref\|ZP_03021632.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis Tsiankovskii-I],... gi\|254733962 - gi\|254733962\|ref\|ZP_05191676.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Western Nor... gi\|254740350 - gi\|254740350\|ref\|ZP_05198041.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Kruger B] gi\|254753738 - gi\|254753738\|ref\|ZP_05205773.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Vollum] gi\|254758834 - gi\|254758834\|ref\|ZP_05210861.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Australia 9... gi\|47526574, gi\|... - gi\|47526574\|ref\|YP_017923.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. 'Ames Ancestor... gi\|167634275, gi... - gi\|167634275\|ref\|ZP_02392596.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0442], gi\|... gi\|30255252, gi\|... - gi\|30261398\|ref\|NP_843775.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Ames], gi\|3025... gi\|164713870, gi... - gi\|165870375\|ref\|ZP_02215030.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0488], gi\|... gi\|65318663, gi\|... - gi\|65318663\|ref\|ZP_00391622.1\| COG0277: FAD/FMN-containing dehydrogenases [Bacillus anthracis str. A... gi\|170686830, gi... - gi\|170686830\|ref\|ZP_02878050.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0465], gi\|... gi\|167639245, gi... - gi\|167639245\|ref\|ZP_02397517.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0193], gi\|...	299.0	[0..5]	[457..17]
gi\|25323065 - pir\|\|B83991 glycolate oxidase subunit BH2730 [imported] - Bacillus halodurans (strain C-125) gi\|10175351, gi\|... - gi\|15615293\|ref\|NP_243596.1\| glycolate oxidase subunit [Bacillus halodurans C-125], gi\|10175351\|dbj\|...	299.0	[0..5]	[457..17]
gi\|42736403, gi\|... - gi\|42780484\|ref\|NP_977731.1\| glycolate oxidase, subunit GlcD [Bacillus cereus ATCC 10987], gi\|427364...	299.0	[0..5]	[457..17]

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Predicted Domain #1

Region A:
Residues: [1-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPHINKLS QDGRVRFSNW AKTFSAISLG LRCPKTEEQL REILVDANSN GKKIRVVGAG  60
   61 HSPSDIVCTS GYLLSLDKMN KVVSFDPDSL SITVQAGIRF YQVQEILQNL GYSLPIVGSI 120
  121 SETSVSGIMS TCTHGSSLQH QVLPHYIKSM RIMLADGSIV TCSRELQKDM FAAAQVSLGA 180
  181 LGVIVDITIS VVPAFDLVAT EDVTTVTDLF QDWKNNLIWE SAEFVRVHVF PYANRAVVWR 240
  241 ANKVEPNTVP HTPKPSLFRL KLDSFVYQCL LFVGKCVNRV TPYLERFWFK CHYGSKLGTA 300
  301 LQVAGPGFDV LQMFCYFSQH VSEWGIPLES APDALEKLIN YTVDDAGKIG AYTHWPIEVR 360
  361 VCAPTPEDEC WLSTDCKVPT CYIEAIMYRP FSTSINYKPY FKALEDIANQ YNGKPHWAKE 420
  421 YSLTKEQLLE RYPNLSKWLS LRKLLDPKGV FWNDYLQRHL G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	2bvfA
Description:	Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits