YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC6F6.03c
Organism:	Schizosaccharomyces pombe
Length:	537 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC6F6.03c.

Description	E-value	Query Range	Subject Range
gi\|119179093, gi... - gi\|90299956\|gb\|EAS29587.1\| hypothetical protein CIMG_08333 [Coccidioides immitis RS], gi\|119179093\|r...	291.0	[0..1]	[512..1]
gi\|50759744 - gi\|50759744\|ref\|XP_417761.1\| PREDICTED: similar to nucleolar GTPase [Gallus gallus]	288.0	[0..6]	[508..73]
NOG2_YEAST - Nucleolar GTP-binding protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOG2 PE=... NOG2 - Putative GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for...	287.0	[0..1]	[461..1]
NOG2_YARLI - Nucleolar GTP-binding protein 2 OS=Yarrowia lipolytica GN=NOG2 PE=3 SV=1 NOG2_YARLI - Nucleolar GTP-binding protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NOG2 PE=3 SV=1	287.0	[0..1]	[480..1]
NOG2_ASHGO - Nucleolar GTP-binding protein 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRR... NOG2_ASHGO - Nucleolar GTP-binding protein 2 OS=Ashbya gossypii GN=NOG2 PE=3 SV=1	286.0	[0..1]	[471..1]
gi\|74186961 - gi\|74186961\|dbj\|BAE20521.1\| unnamed protein product [Mus musculus]	286.0	[0..6]	[523..7]
NOG2_KLULA - Nucleolar GTP-binding protein 2 OS=Kluyveromyces lactis GN=NOG2 PE=3 SV=1 NOG2_KLULA - Nucleolar GTP-binding protein 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / N...	285.0	[0..1]	[472..1]
GNL2 - guanine nucleotide binding protein-like 2 (nucleolar)	284.0	[0..6]	[529..7]
gi\|73976835 - gi\|73976835\|ref\|XP_532556.2\| PREDICTED: similar to Nucleolar GTP-binding protein 2 (Autoantigen NGP-...	284.0	[0..6]	[524..7]
gi\|46109008, gi\|... - gi\|46109008\|ref\|XP_381562.1\| hypothetical protein FG01386.1 [Gibberella zeae PH-1], gi\|42546119\|gb\|E...	284.0	[0..1]	[524..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTYKKEKSR IGREGANEKK PGNLRVKGEN FYRNAKDVAR VNMYRGGKAK YNAAGELVRA  60
   61 AEFQSSEVPK ARIQPDRRWF NNTRVIAQPT LTQFREAMGQ KLNDPYQVLL RRNKLPMSLL 120
  121 QENTEIPKVR VLESEPFENT FG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.154902
Match:	1xzpA
Description:	Structure of the GTP-binding protein TrmE from Thermotoga maritima
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [143-537]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKSQRKRPKI SFDSVAELAK ESDEKQNAYE EKIEERILAN PDESDDVMLA ARDAIFSKGQ  60
   61 SKRIWNELYK VIDSSDVLIQ VLDARDPVGT RCGTVERYLR NEASHKHMIL VLNKVDLVPT 120
  121 SVAAAWVKIL AKEYPTIAFH ASINNSFGKG SLIQILRQFA SLHSDKKQIS VGLIGFPNAG 180
  181 KSSIINTLRK KKVCNVAPIP GETKVWQYVA LMKRIFLIDC PGIVPPSSND SDAELLLKGV 240
  241 VRVENVSNPE AYIPTVLSRC KVKHLERTYE ISGWNDSTEF LAKLAKKGGR LLKGGEPDEA 300
  301 SVAKMVLNDF MRGKIPWFIG PKGLSSSNDE INSSQKVATQ QTEGSDQDGE EAEEEWHGIS 360
  361 DDGKADESES TKPVAEGSAS ESTDESAVDD NKNRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits