YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC644.13c
Organism:	Schizosaccharomyces pombe
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC644.13c.

Description	E-value	Query Range	Subject Range
gi\|94408016 - gi\|94408016\|ref\|XP_990916.1\| PREDICTED: similar to Yip1 domain family, member 6 [Mus musculus]	231.0	[0..7]	[224..22]
YIPF6_RAT - Protein YIPF6 OS=Rattus norvegicus GN=Yipf6 PE=1 SV=1	224.0	[0..5]	[224..3]
gi\|55663298 - gi\|55663298\|ref\|XP_521102.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] YIPF6 - Yip1 domain family, member 6	223.0	[0..13]	[224..8]
gi\|15214676, gi\|... - gi\|28603852\|ref\|NP_776195.1\| Yip1 domain family, member 6 [Homo sapiens], gi\|15214676\|gb\|AAH12469.1\|...	222.0	[0..13]	[224..8]
gi\|30175353, gi\|... - gi\|31222950\|ref\|XP_317244.1\| ENSANGP00000021957 [Anopheles gambiae str. PEST], gi\|30175353\|gb\|EAA124... AGAP008226-PA - \|protein_coding\|3R:7165555:7166543:1\|gene:AGAP008226	220.0	[0..8]	[224..5]
YIPF6_BOVIN - Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1	216.0	[0..13]	[224..8]
gi\|74007524 - gi\|74007524\|ref\|XP_549051.2\| PREDICTED: similar to Yip1 domain family, member 6 isoform 1 [Canis fam...	215.0	[0..15]	[224..10]
CE40140 - Yeast YIP1 protein like status:Confirmed UniProt:O02335 protein_id:CAB03470.2	214.0	[0..17]	[224..6]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDIGKHNTE IEQDEMENLL RMDPVRSSLD VESRAIEPDN IAGESIVETR FTGGDSLDEP  60
   61 IRVTLFNEFR AIGEKLVYVL YPKNAQVLRD WDLWGPLIFS LVIALALALS TDKIERESVF 120
  121 TVVVALIWFG EAVCSLNIKL LGANISIFQS MCILGYSSFP LMIASIVCAF VPLIFIRIPV 180
  181 IVAMYAWTLF AAMGVLQNSN LSNKKLLAVY PLFLFYFSLA WIIFL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.69897
Match:	PF04893.8
Description:	No description for PF04893.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits