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View Structure Prediction Details

Protein: SPBC16G5.05c
Organism: Schizosaccharomyces pombe
Length: 383 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16G5.05c.

Description E-value Query
Range
Subject
Range
VAP14_ARATH - Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1
178.0 [0..8] [304..13]
gi|145638188, gi... - gi|145638188|ref|ZP_01793798.1| immunoglobin A1 protease [Haemophilus influenzae PittII], gi|1452725...
gi|46133229 - gi|46133229|ref|ZP_00156849.2| COG3468: Type V secretory pathway, adhesin AidA [Haemophilus influenz...
147.0 [0..88] [362..1067]
gi|42734418, gi|... - gi|42734418|ref|NP_956212.2| VAMP (vesicle-associated membrane protein)-associated protein A [Danio ...
145.0 [0..1] [212..8]
gi|92872094 - gi|92872094|gb|ABE80895.1| Major sperm protein [Medicago truncatula]
138.0 [0..1] [213..8]
gi|14210081 - gi|14210081|gb|AAK56925.1|AF369907_1 Iga1 protease type 2 [Haemophilus influenzae biotype aegyptius]
138.0 [0..22] [372..953]
gi|39586313, gi|... - gi|39586313|emb|CAE66724.1| Hypothetical protein CBG12070 [Caenorhabditis briggsae], gi|187029900|em...
136.0 [0..49] [366..1355]
gi|47220459 - gi|47220459|emb|CAG03239.1| unnamed protein product [Tetraodon nigroviridis]
135.0 [0..1] [202..8]
IGA2_HAEIF - Immunoglobulin A1 protease autotransporter OS=Haemophilus influenzae GN=iga PE=3 SV=1
134.0 [0..22] [362..960]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVECSGELF FYPPFTTMSK ELISVHNPNP EPVIFKVKTT APKHYCVRPN SGKIEPKSTV  60
   61 NVQVLLQAMK EEPAPDFKCR DKFLIQSMAI GDADTSNVEN YHEFWTEMEK QGRSIFDRKI 120
  121 RCVYSTKQPP QSADKQVENT STSNPPVSVE GSENLASSVG GPTA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.39794
Match: 2criA
Description: Solution structure of the MSP domain of mouse VAMP-associated proteinA
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [165-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGVSLDEAQN DFNGAKDHLS NGVNTVVPDS TFRSTFESAQ IPDASVVQTV VTDADNGAAS  60
   61 VKDTIVTAES ASSKGADVAR SKVQDIIDNE IPKPSESPRR SVSSTPPVHP PPPVPQNLSA 120
  121 VNEEFDTKKN DFDSKLPEST PAVEKVSENL GSETRESLQG AKPAAGAHSS DNALEQIKPS 180
  181 YSADPSSSTG ASLTESPGIP PNIVIILCLI FFLIGYLFF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.08
Match: 2j63A
Description: No description for 2j63A was found.

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