YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC16G5.05c
Organism:	Schizosaccharomyces pombe
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16G5.05c.

Description	E-value	Query Range	Subject Range
VAP14_ARATH - Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1	178.0	[0..8]	[304..13]
gi\|145638188, gi... - gi\|145638188\|ref\|ZP_01793798.1\| immunoglobin A1 protease [Haemophilus influenzae PittII], gi\|1452725... gi\|46133229 - gi\|46133229\|ref\|ZP_00156849.2\| COG3468: Type V secretory pathway, adhesin AidA [Haemophilus influenz...	147.0	[0..88]	[362..1067]
gi\|42734418, gi\|... - gi\|42734418\|ref\|NP_956212.2\| VAMP (vesicle-associated membrane protein)-associated protein A [Danio ...	145.0	[0..1]	[212..8]
gi\|92872094 - gi\|92872094\|gb\|ABE80895.1\| Major sperm protein [Medicago truncatula]	138.0	[0..1]	[213..8]
gi\|14210081 - gi\|14210081\|gb\|AAK56925.1\|AF369907_1 Iga1 protease type 2 [Haemophilus influenzae biotype aegyptius]	138.0	[0..22]	[372..953]
gi\|39586313, gi\|... - gi\|39586313\|emb\|CAE66724.1\| Hypothetical protein CBG12070 [Caenorhabditis briggsae], gi\|187029900\|em...	136.0	[0..49]	[366..1355]
gi\|47220459 - gi\|47220459\|emb\|CAG03239.1\| unnamed protein product [Tetraodon nigroviridis]	135.0	[0..1]	[202..8]
IGA2_HAEIF - Immunoglobulin A1 protease autotransporter OS=Haemophilus influenzae GN=iga PE=3 SV=1	134.0	[0..22]	[362..960]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVECSGELF FYPPFTTMSK ELISVHNPNP EPVIFKVKTT APKHYCVRPN SGKIEPKSTV  60
   61 NVQVLLQAMK EEPAPDFKCR DKFLIQSMAI GDADTSNVEN YHEFWTEMEK QGRSIFDRKI 120
  121 RCVYSTKQPP QSADKQVENT STSNPPVSVE GSENLASSVG GPTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	2criA
Description:	Solution structure of the MSP domain of mouse VAMP-associated proteinA
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [165-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGVSLDEAQN DFNGAKDHLS NGVNTVVPDS TFRSTFESAQ IPDASVVQTV VTDADNGAAS  60
   61 VKDTIVTAES ASSKGADVAR SKVQDIIDNE IPKPSESPRR SVSSTPPVHP PPPVPQNLSA 120
  121 VNEEFDTKKN DFDSKLPEST PAVEKVSENL GSETRESLQG AKPAAGAHSS DNALEQIKPS 180
  181 YSADPSSSTG ASLTESPGIP PNIVIILCLI FFLIGYLFF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.08
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits