YRC Public Data Repository - Protein Structure Prediction

Protein:	sec62
Organism:	Schizosaccharomyces pombe
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec62.

Description	E-value	Query Range	Subject Range
gi\|67540198, gi\|... - gi\|67540198\|ref\|XP_663873.1\| hypothetical protein AN6269.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	331.0	[0..3]	[245..102]
gi\|28924204, gi\|... - gi\|32411415\|ref\|XP_326188.1\| hypothetical protein [Neurospora crassa], gi\|28924204\|gb\|EAA33359.1\| co... gi\|85108529 - gi\|85108529\|ref\|XP_962595.1\| hypothetical protein NCU06333 [Neurospora crassa OR74A]	304.0	[0..4]	[221..103]
gi\|115384104, gi... - gi\|115384104\|ref\|XP_001208599.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	301.0	[0..3]	[222..104]
SC62_YARLI, SEC6... - Translocation protein SEC62 OS=Yarrowia lipolytica GN=SEC62 PE=3 SV=2, (Q99161) Translocation protei... SEC62_YARLI - Translocation protein SEC62 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC62 PE=3 SV=2	301.0	[0..16]	[273..24]
gi\|1465716 - gi\|1465716\|emb\|CAA67878.1\| SEC62 [Yarrowia lipolytica]	299.0	[0..16]	[273..24]
gi\|90304521, gi\|... - gi\|90304521\|gb\|EAS34152.1\| hypothetical protein CIMG_05176 [Coccidioides immitis RS], gi\|119190257\|r...	296.0	[0..4]	[257..119]
gi\|71014085, gi\|... - gi\|71014085\|ref\|XP_758693.1\| hypothetical protein UM02546.1 [Ustilago maydis 521], ref\|XP_400161.1\| ...	290.0	[0..18]	[219..115]
gi\|39975803, gi\|... - gi\|39975803\|ref\|XP_369292.1\| hypothetical protein MGG_06172 [Magnaporthe grisea 70-15], gb\|EAA53044....	287.0	[0..7]	[223..91]
gi\|46123599, gi\|... - gi\|46123599\|ref\|XP_386353.1\| hypothetical protein FG06177.1 [Gibberella zeae PH-1], gi\|42551898\|gb\|E...	287.0	[0..7]	[247..104]
gi\|116194568, gi... - gi\|88179795\|gb\|EAQ87263.1\| hypothetical protein CHGG_03882 [Chaetomium globosum CBS 148.51], gi\|1161...	284.0	[0..13]	[222..106]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSNVPVLK DEDKCKFSMR FTNFLKSRPE LKTKPAILNG KRVYYFRVKR VLRFLTSEAY  60
   61 TPKKYKGFPE ISSREEAIEV LKLLIMNSML VRVDKLPPKQ RKQKLVELQI N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [112-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNQDFQDDMH YVWLYEPLPK RVMALAVLFA LVVLALVLFP LWPMFMRKGA WYLSMGGLGV  60
   61 IGLFFVLVIL RFFLFCITAV IVRPGIWLFP NLLADVGFCD SFKPLWSWHN SKSEVKKTRK 120
  121 SKKLSKKATS PAASATPEKS STSTTSLKNL RHRNPTVEEV SE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits