YRC Public Data Repository - Protein Structure Prediction

Protein:	arg6
Organism:	Schizosaccharomyces pombe
Length:	500 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arg6.

Description	E-value	Query Range	Subject Range
gi\|21108597, gi\|... - gi\|21243082\|ref\|NP_642664.1\| acetylglutamate kinase [Xanthomonas axonopodis pv. citri str. 306], gi\|...	373.0	[0..4]	[499..9]
gi\|188576222, gi... - gi\|188576222\|ref\|YP_001913151.1\| acetylglutamate kinase [Xanthomonas oryzae pv. oryzae PXO99A], gi\|1... gi\|58426889, gi\|... - gi\|58582295\|ref\|YP_201311.1\| acetylglutamate kinase [Xanthomonas oryzae pv. oryzae KACC10331], gi\|58...	371.0	[0..4]	[499..9]
gi\|84624175, gi\|... - gi\|84624175\|ref\|YP_451547.1\| acetylglutamate kinase [Xanthomonas oryzae pv. oryzae MAFF 311018], gi\|...	368.0	[0..4]	[499..9]
gi\|21231683, gi\|... - gi\|21231683\|ref\|NP_637600.1\| acetylglutamate kinase [Xanthomonas campestris pv. campestris str. ATCC... gi\|66573526, gi\|... - gi\|66768194\|ref\|YP_242956.1\| acetylglutamate kinase [Xanthomonas campestris pv. campestris str. 8004...	367.0	[0..4]	[499..9]
gi\|49129370, gi\|... - gi\|67903566\|ref\|XP_682039.1\| hypothetical protein AN8770.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	357.0	[0..2]	[493..60]
ARGB_XANAC - Acetylglutamate kinase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=argB PE=3 SV=2 ARGB_XANAC - Acetylglutamate kinase OS=Xanthomonas axonopodis pv. citri GN=argB PE=3 SV=2	356.0	[0..17]	[499..1]
gi\|78036533, gi\|... - gi\|78048103\|ref\|YP_364278.1\| acetylglutamate kinase [Xanthomonas campestris pv. vesicatoria str. 85-...	356.0	[0..17]	[499..1]
ARGB_XANCP - Acetylglutamate kinase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPP... ARGB_XANCP - Acetylglutamate kinase OS=Xanthomonas campestris pv. campestris GN=argB PE=3 SV=2	350.0	[0..17]	[499..1]
gi\|159122568 - gi\|159122568\|gb\|EDP47689.1\| acetylglutamate kinase, putative [Aspergillus fumigatus A1163] gi\|70984557, gi\|... - gi\|70984557\|ref\|XP_747785.1\| acetylglutamate kinase [Aspergillus fumigatus Af293], gi\|66845412\|gb\|EA...	349.0	[0..3]	[493..64]
gi\|9105937, gi\|1... - gi\|9105937\|gb\|AAF83811.1\|AE003938_2 acetylglutamate kinase [Xylella fastidiosa 9a5c], gi\|15837603\|re... gi\|11360469 - gi\|11360469\|pir\|\|H82734 acetylglutamate kinase XF1001 [imported] - Xylella fastidiosa (strain 9a5c)	349.0	[0..5]	[500..6]

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Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKPSLSQDL IWILKSVQSR RSTKGFLQKH SSLKDGSPNK KSFAQPISSS FLNRISITKI  60
   61 DDVDSLSDNT LYGIGRSINS LARLGIQSVI VPTSNPIGMT SPFKYLENGT VVAKKRKLSI 120
  121 FEELQQQQNR VIRVSEIFSK AGVLTRPSYS SVCQLGPEGP SVENVQGIFQ ALSSLYTVIV 180
  181 PSSILMPNVI EVPIDGNEVL AGLTYSLHKP NFGFWVDRIV ILDKNGGMPC SKRQTGSSHV 240
  241 LINLAQEFDE LAKTLPPYHR KNLILVRRCL KMLPDDASAL ITTPEDAMLT NPVLDKNPLI 300
  301 HNVLTDRSII SC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.30103
Match:	2jj4A
Description:	No description for 2jj4A was found.

Predicted Domain #2

Region A:
Residues: [313-500]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLPRDRSPIT KTTVLRSGVP VYTFLGPKCL TDGSVSWERL WVLINDSFKR TLDMDAYLDR  60
   61 LKNSLAAVII AGDYLGTAIV TYEQPDGTTN EKVPYLDKLA VSQGAQGSAA ISDVMFNVMT 120
  121 DLFPKELIWR SRLTNPVNKW YFERSVGSLK SSKTPWKLFW TGDSHVRNLD RVNQYMSVID 180
  181 KIQPTWLN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.28
Match:	1m44A
Description:	Aminoglycoside 2'-N-acetyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
N-acyltransferase activity	4.54461415190259	bayes_pls_golite062009
N-acetyltransferase activity	4.45530611787932	bayes_pls_golite062009
transferase activity, transferring acyl groups	4.04508847480899	bayes_pls_golite062009
acetyltransferase activity	2.35756803944936	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.83027840181539	bayes_pls_golite062009
catalytic activity	1.823104805379	bayes_pls_golite062009
acyltransferase activity	1.79975330506106	bayes_pls_golite062009
transferase activity	1.40893155422699	bayes_pls_golite062009
N-succinyltransferase activity	1.21801541539205	bayes_pls_golite062009
histone acetyltransferase activity	0.982216965139164	bayes_pls_golite062009
lysine N-acetyltransferase activity	0.982216965139164	bayes_pls_golite062009
transcription factor binding	0.145852327776949	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: