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View Structure Prediction Details

Protein: SPAC458.02c
Organism: Schizosaccharomyces pombe
Length: 468 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC458.02c.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
186.0 [0..26] [466..2297]
gi|4249701 - gi|4249701|gb|AAD13772.1| myosin heavy chain [Rana catesbeiana]
181.0 [0..2] [465..166]
gi|9800488, gi|1... - gi|9800488|gb|AAF99315.1|AF272034_1 fast myosin heavy chain isoform 3 [Gallus gallus], gi|165973976|...
179.0 [0..2] [465..1280]

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Predicted Domain #1
Region A:
Residues: [1-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHKPVRPN EALHKEALEE LDAKINEAKK RFNEHKEKLG AIRGGGSLQE KNAELRAELD  60
   61 NIRNAQAAIR SSKQTLINKV KAQDELLKKK VKELTAMKKT VPFKSEVELD KHVKQLQAAV 120
  121 DSGTLKIVDE KKYLREISQC NRTRKSFVEL NALQTSIDTI RNELNELRDQ LNDSESKKLS 180
  181 DKFVEIRSEL DEVRKQQDGY YKDQRKLIAE RDDEKTALDD LYNQRRALQR EYDTQLRAFR 240
  241 TYEREQRAKR QEQFRLEREN REKEKRRIAA QRKLEEASIP AFTEEILACE NLLKVFHVPV 300
  301 ESSTTNAVST 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.154902
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [311-468]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNTSSKILKP RTLTPRTVDP IPEGTIIKKE SSDDAMFSGL KKSKPKKSNK SNNNQADSDR  60
   61 LNLSFGTIKE FDFVGVPAPF TKSQVDSAVE QLKSRIAHFK EQQDSVTKQR IEKAKQEIEK 120
  121 LEAKYNSKEE KTLTEADMVI SSEETVTVTN DLEVEATA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.154902
Match: 2tmaA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle