YRC Public Data Repository - Protein Structure Prediction

Protein:	pam17
Organism:	Schizosaccharomyces pombe
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pam17.

Description	E-value	Query Range	Subject Range
PAM17_YEAST - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Saccharomyces cerevisiae (... PAM17 - Constituent of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); proposed alterna...	253.0	[0..26]	[190..30]
PAM17_USTMA - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Ustilago maydis GN=PAM17 P... PAM17_USTMA - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Ustilago maydis (strain 52...	253.0	[0..41]	[190..75]
PAM17_ASHGO - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Ashbya gossypii (strain AT... PAM17_ASHGO - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Ashbya gossypii GN=PAM17 P...	252.0	[0..4]	[190..6]
gi\|40746621, gi\|... - gi\|67516179\|ref\|XP_657975.1\| hypothetical protein AN0371.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	250.0	[0..25]	[189..492]
PAM17_CANGA - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Candida glabrata (strain A... PAM17_CANGA - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Candida glabrata GN=PAM17 ...	244.0	[0..5]	[190..4]
gi\|68471792, gi\|... - gi\|68471792\|ref\|XP_719939.1\| potential mitochondrial protein Fmp16 [Candida albicans SC5314], gi\|684... orf19.7870, orf1... - orf19.240 CGDID:CAL0003975 Assembly 19, Contig19-10046 (20852, 21502) CDS, translated using codon ta...	238.0	[0..28]	[190..53]
PAM17_EMENI - Presequence translocated-associated motor subunit pam17, mitochondrial OS=Emericella nidulans GN=pam...	238.0	[0..25]	[189..71]
PAM17_GIBZE - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Gibberella zeae (strain PH... PAM17_GIBZE - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Gibberella zeae GN=PAM17 P...	238.0	[0..34]	[189..74]
PAM17_CANAL - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Candida albicans GN=PAM17 ... gi\|238880671 - gi\|238880671\|gb\|EEQ44309.1\| conserved hypothetical protein [Candida albicans WO-1] PAM17_CANAL - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Candida albicans (strain S...	238.0	[0..28]	[190..22]
PAM17_NEUCR - Presequence translocated-associated motor subunit pam17, mitochondrial OS=Neurospora crassa (strain ... PAM17_NEUCR - Presequence translocated-associated motor subunit pam-17, mitochondrial OS=Neurospora crassa GN=pam-...	235.0	[0..46]	[189..119]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPIIRPGLV VKRLQSPKIF LTLWKTCYNV KTYSTESIKQ KKPQDLNWPT FLKLRKSRRI  60
   61 FETLTSIPTA LTGLGLGSAY FLTRTVDPTM TIMGLDLFTL YVIGTIASGG LGWLLGPSIG 120
  121 RKIWTLLHKS QARQIAAREQ EFYRHLVKNR VTPQMESYSN PIPDYYGEKI YSLSDYRRWL 180
  181 RDQKAYIQRA FWRTSNR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	112.244125
Match:	PF08566.1
Description:	No description for PF08566.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits