YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC14F5.06
Organism:	Schizosaccharomyces pombe
Length:	593 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC14F5.06.

Description	E-value	Query Range	Subject Range
gi\|150031741, gi... - gi\|150377194\|ref\|YP_001313789.1\| ABC transporter related [Sinorhizobium medicae WSM419], gi\|15003174...	426.0	[0..73]	[565..4]
gi\|116611376, gi... - gi\|66964552\|ref\|ZP_00412121.1\| ABC transporter [Arthrobacter sp. FB24], gi\|66869316\|gb\|EAL96683.1\| A...	417.0	[0..76]	[569..12]
gi\|93354411, gi\|... - gi\|94310559\|ref\|YP_583769.1\| ABC transporter-related protein [Ralstonia metallidurans CH34], gi\|9335...	416.0	[0..75]	[562..9]
gi\|16263236, gi\|... - gi\|16263236\|ref\|NP_436029.1\| ABC transporter ATP-binding protein [Sinorhizobium meliloti 1021], gi\|1... gi\|25384905 - pir\|\|G95359 Probable ABC transporter, ATP-binding protein SMa1434 [imported] - Sinorhizobium melilot...	416.0	[0..73]	[565..4]
gi\|86137005, gi\|... - gi\|86137005\|ref\|ZP_01055583.1\| peptide/opine/nickel uptake family ABC transporter, ATP-binding prote...	415.0	[0..75]	[562..1]
gi\|72609707, gi\|... - gi\|74017822\|ref\|ZP_00688445.1\| ABC transporter [Burkholderia ambifaria AMMD], gi\|72609707\|gb\|EAO4565...	414.0	[0..73]	[561..9]
gi\|25384882 - pir\|\|AI3601 oligopeptide transport ATP-binding protein oppD BMEII0738 [imported] - Brucella melitens... gi\|17984928, gi\|... - gi\|17989083\|ref\|NP_541716.1\| oligopeptide transport ATP-binding protein OPPD [Brucella melitensis 16... gi\|225616815, gi... - gi\|225628969\|ref\|ZP_03787003.1\| oligopeptide transport ATP-binding protein OPPD [Brucella ceti str. ... gi\|237817153, gi... - gi\|237817153\|ref\|ZP_04596145.1\| oligopeptide transport ATP-binding protein OPPD [Brucella abortus st...	413.0	[0..61]	[566..5]
gi\|69300609, gi\|... - gi\|99078410\|ref\|YP_611668.1\| ABC transporter related [Silicibacter sp. TM1040], gi\|99035548\|gb\|ABF62...	413.0	[0..75]	[562..1]
gi\|33568466, gi\|... - gi\|33600866\|ref\|NP_888426.1\| putative ABC transport ATP-binding subunit [Bordetella bronchiseptica R...	412.0	[0..65]	[562..5]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESLTRIAI VSEDKCRPKK CRQECRRSCP VVRTGKLCIE VNPTDRIAFI SETLCIGCGI  60
   61 CVKKCPFGAI NIIN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.34
Match:	2ivfB
Description:	No description for 2ivfB was found.

Predicted Domain #2

Region A:
Residues: [75-593]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPTNLESEVT HRYSANSFKL HRLPTPRPGQ VLGLVGTNGI GKSTALKILS GKMKPNLGRY  60
   61 DNPPDWAEVV KYFRGSELQN FFTKVVEDNI KALIKPQYVD HIPRAIKTGD KTVSGLIKAR 120
  121 ANNNNFEEVM DHTDLQNLLN REVGHLSGGE LQRFAIAAVA TQKADVYMFD EPSSYLDIKQ 180
  181 RLKAGRVIRS LLATTNYVIV VEHDLSVLDY LSDFVCVLYG VPSMYGVVTL PYSVREGINI 240
  241 FLDGHIPTEN LRFRSEALTF RLADASDEIT ADRTAEYNYP DHVIEQGDFK LTIKSGGFSD 300
  301 AEIIVLLGEN GTGKTTFCKW MAKNSDLKIS MKPQTIAPKF QGTVRMLFLK KIRAAFLNGK 360
  361 FQSEVCKPLS IDNIIDQEVL NLSGGELQRV AICLALGMPA DVYLIDEPSA YLDSEQRIIA 420
  421 SKVIRRFIVN SRKTAFIVEH DFIMATYLAD RVILFEGQPS RDARCNPPQS LLTGMNTFLK 480
  481 NLDVTFRRDP NTLRPRINKF DSQMDQEQKN AGNYFFLEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.0
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits