YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC24C6.03
Organism:	Schizosaccharomyces pombe
Length:	425 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC24C6.03.

Description	E-value	Query Range	Subject Range
gi\|167620276 - gi\|167620276\|ref\|ZP_02388907.1\| threonyl-tRNA synthetase [Burkholderia thailandensis Bt4] SYT_BURTA - Threonine--tRNA ligase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 10...	324.0	[0..2]	[424..214]
SYT_CUPPJ - Threonine--tRNA ligase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=thrS PE=3 SV=1	323.0	[0..1]	[424..213]
gi\|148027559, gi... - gi\|254358432\|ref\|ZP_04974705.1\| threonyl-tRNA synthetase [Burkholderia mallei 2002721280], gi\|194575... gi\|254206061, gi... - gi\|254206061\|ref\|ZP_04912413.1\| threonyl-tRNA synthetase [Burkholderia mallei JHU], gi\|194529494\|ref... SYT_BURPS - Threonine--tRNA ligase OS=Burkholderia pseudomallei (strain K96243) GN=thrS PE=3 SV=1 SYT_BURMA - Threonine--tRNA ligase OS=Burkholderia mallei (strain ATCC 23344) GN=thrS PE=3 SV=1 SYT_BURMA - Threonine--tRNA ligase OS=Burkholderia mallei GN=thrS PE=3 SV=1 SYT_BURPS - Threonine--tRNA ligase OS=Burkholderia pseudomallei GN=thrS PE=3 SV=1 gi\|225928297, gi... - gi\|226199711\|ref\|ZP_03795264.1\| threonine--tRNA ligase [Burkholderia pseudomallei Pakistan 9], gi\|22... gi\|237812016, gi... - gi\|237812016\|ref\|YP_002896467.1\| threonine--tRNA ligase [Burkholderia pseudomallei MSHR346], gi\|2375... gi\|238562605, gi... - gi\|238562605\|ref\|ZP_04610138.1\| threonine--tRNA ligase [Burkholderia mallei GB8 horse 4], gi\|2385222... gi\|194525325, gi... - gi\|254199739\|ref\|ZP_04906105.1\| threonyl-tRNA synthetase [Burkholderia mallei FMH], gi\|194525325\|ref... gi\|134246235, gi... - gi\|134282197\|ref\|ZP_01768902.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei 305], gi\|1342462... SYT_BURM9 - Threonine--tRNA ligase OS=Burkholderia mallei (strain NCTC 10229) GN=thrS PE=3 SV=1 gi\|167902959 - gi\|167902959\|ref\|ZP_02490164.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177] SYT_BURMS - Threonine--tRNA ligase OS=Burkholderia mallei (strain SAVP1) GN=thrS PE=3 SV=1 gi\|167894556 - gi\|167894556\|ref\|ZP_02481958.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei 7894] SYT_BURM7 - Threonine--tRNA ligase OS=Burkholderia mallei (strain NCTC 10247) GN=thrS PE=3 SV=1 gi\|167919220 - gi\|167919220\|ref\|ZP_02506311.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei BCC215] SYT_BURP6 - Threonine--tRNA ligase OS=Burkholderia pseudomallei (strain 668) GN=thrS PE=3 SV=1 gi\|167911196 - gi\|167911196\|ref\|ZP_02498287.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei 112] gi\|167816071 - gi\|167816071\|ref\|ZP_02447751.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei 91] SYT_BURP0 - Threonine--tRNA ligase OS=Burkholderia pseudomallei (strain 1106a) GN=thrS PE=3 SV=1 gi\|167738851 - gi\|167738851\|ref\|ZP_02411625.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei 14] gi\|167845979 - gi\|167845979\|ref\|ZP_02471487.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei B7210] gi\|167824445 - gi\|167824445\|ref\|ZP_02455916.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei 9] gi\|254259413, gi... - gi\|254259413\|ref\|ZP_04950467.1\| threonine--tRNA ligase [Burkholderia pseudomallei 1710a], gi\|2542181... gi\|242141027, gi... - gi\|242317788\|ref\|ZP_04816804.1\| threonine--tRNA ligase [Burkholderia pseudomallei 1106b], gi\|2421410... gi\|167719848 - gi\|167719848\|ref\|ZP_02403084.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei DM98] gi\|167003090, gi... - gi\|243061341\|gb\|EES43527.1\| threonine--tRNA ligase [Burkholderia mallei PRL-20], gi\|167003090\|ref\|ZP... gi\|217423341, gi... - gi\|217423341\|ref\|ZP_03454842.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei 576], gi\|2173931... gi\|157806992, gi... - gi\|254297839\|ref\|ZP_04965292.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei 406e], gi\|194571... gi\|254180004, gi... - gi\|254180004\|ref\|ZP_04886603.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei 1655], gi\|194506... gi\|254177492, gi... - gi\|254177492\|ref\|ZP_04884147.1\| threonyl-tRNA synthetase [Burkholderia mallei ATCC 10399], gi\|194313... SYT_BURP1 - Threonine--tRNA ligase OS=Burkholderia pseudomallei (strain 1710b) GN=thrS PE=3 SV=1 gi\|254197889, gi... - gi\|254197889\|ref\|ZP_04904311.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei S13], gi\|1945150... gi\|254188582, gi... - gi\|254188582\|ref\|ZP_04895093.1\| threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237], ...	323.0	[0..2]	[424..214]
gi\|82531244 - gi\|82531244\|ref\|ZP_00890465.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia pseudomallei 1106a] gi\|83623018 - gi\|83623018\|ref\|ZP_00933304.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia mallei JHU] gi\|83678955, gi\|... - gi\|83678955\|ref\|ZP_00940674.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia pseudomallei 406e], g... gi\|82534581 - gi\|82534581\|ref\|ZP_00893613.1\| hypothetical protein Bpse110_02004189 [Burkholderia pseudomallei 1106... gi\|83618149 - gi\|83618149\|ref\|ZP_00928620.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia mallei FMH] gi\|87315477, gi\|... - gi\|87315477\|ref\|ZP_01096505.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia mallei 2002721280], g... gi\|100120652, gi... - gi\|67758563\|ref\|ZP_00497324.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia pseudomallei S13], gi... gi\|85064735 - gi\|85064735\|ref\|ZP_01025588.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia mallei 10229] gi\|67647610 - gi\|67647610\|ref\|ZP_00445850.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia mallei NCTC 10247] gi\|67669281, gi\|... - gi\|99907632\|ref\|ZP_01315504.1\| hypothetical protein Bpse1_03005166 [Burkholderia pseudomallei 1655],... gi\|100918325, gi... - gi\|67638709\|ref\|ZP_00437644.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia mallei 10399], gi\|100... gi\|67641368 - gi\|67641368\|ref\|ZP_00440148.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia mallei GB8 horse 4] gi\|100058794, gi... - gi\|67752815\|ref\|ZP_00491774.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur]... gi\|84522847 - gi\|84522847\|ref\|ZP_01009983.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia mallei SAVP1] gi\|90290648, gi\|... - gi\|90290648\|ref\|ZP_01210297.1\| hypothetical protein Bpse17_02004643 [Burkholderia pseudomallei 1710a... gi\|67737810 - gi\|67737810\|ref\|ZP_00488542.1\| COG0441: Threonyl-tRNA synthetase [Burkholderia pseudomallei 668]	323.0	[0..2]	[424..209]
gi\|94310105, gi\|... - gi\|94310105\|ref\|YP_583315.1\| threonyl-tRNA synthetase [Ralstonia metallidurans CH34], gi\|93353957\|gb...	322.0	[0..1]	[424..241]
SYT_BORA1 - Threonine--tRNA ligase OS=Bordetella avium (strain 197N) GN=thrS PE=3 SV=1	321.0	[0..1]	[424..218]
gi\|83748297, gi\|... - gi\|83748297\|ref\|ZP_00945322.1\| Threonyl-tRNA synthetase [Ralstonia solanacearum UW551], gi\|83725029\|...	321.0	[0..1]	[422..213]
SYT_METCA - Threonyl-tRNA synthetase OS=Methylococcus capsulatus GN=thrS PE=3 SV=1 SYT_METCA - Threonine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=thrS ...	321.0	[0..1]	[425..213]
SYT_NITMU - Threonine--tRNA ligase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=thrS PE=3 SV...	320.0	[0..1]	[424..213]
SYT_RALSO - Threonyl-tRNA synthetase OS=Ralstonia solanacearum GN=thrS PE=3 SV=1 SYT_RALSO - Threonine--tRNA ligase OS=Ralstonia solanacearum (strain GMI1000) GN=thrS PE=3 SV=1	320.0	[0..1]	[424..213]

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Predicted Domain #1

Region A:
Residues: [1-425]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQHLRNRAS IEVLGKAIRK YNVPESANQL LIDMGFIQPS MPGIFQYLPL GLRVQNKICD  60
   61 LLHISMRSLG ASAISLAHLS SKEIWEKSGR WQKTGSELFR LHDRNDREMC LAPTHEEDVT 120
  121 RTMATIIDSQ KQLPIRVYQI GRKFRDELRP RGGLLRGREF MMKDLYTFDI DKASAMKTYE 180
  181 DVLQAYHTFF KEVGLPFVMV KAATGNIGGN LSHEFHYRHP VGEDVIYTCP SCHYSTNSEM 240
  241 LDLSKTSSDI SCPNCNDQLT STTAIEVGHA FYLGKIYSSK FNATVEVKNK QEVLHMGCYG 300
  301 IGVSRLIAAV AHVTKDAKGL VWPSSIAPWK VLVVPTSDNH IQSAETVYDA TANVVGFDNV 360
  361 LLEDRQNRAF GYKMRDAELI GYPFVIVVGS RFQEEGICEI IVRSSGERYK LDKDSLHQVL 420
  421 LGNFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.045757
Match:	2i4lA
Description:	No description for 2i4lA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits