YRC Public Data Repository - Protein Structure Prediction

Protein:	erg3
Organism:	Schizosaccharomyces pombe
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for erg3.

Description	E-value	Query Range	Subject Range
gi\|40738656, gi\|... - gi\|67540672\|ref\|XP_664110.1\| hypothetical protein AN6506.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	265.0	[0..17]	[300..67]
gi\|39953467, gi\|... - gi\|39953467\|ref\|XP_363987.1\| hypothetical protein MGG_08832 [Magnaporthe grisea 70-15], gb\|EAA46489....	260.0	[0..11]	[298..53]
gi\|119196471, gi... - gi\|90307625\|gb\|EAS37256.1\| C-5 sterol desaturase [Coccidioides immitis RS], gi\|119196471\|ref\|XP_0012...	257.0	[0..17]	[300..64]
gi\|114191722, gi... - gi\|115398500\|ref\|XP_001214839.1\| C-5 sterol desaturase [Aspergillus terreus NIH2624], gi\|114191722\|g...	256.0	[0..17]	[300..67]
gi\|159122349 - gi\|159122349\|gb\|EDP47470.1\| sterol delta 5,6-desaturase ERG3 [Aspergillus fumigatus A1163] gi\|52548218 - gi\|52548218\|gb\|AAU82098.1\| C-5 sterol desaturase B-like [Aspergillus fumigatus] gi\|66845190, gi\|... - gi\|70984086\|ref\|XP_747563.1\| sterol delta 5,6-desaturase ERG3 [Aspergillus fumigatus Af293], gi\|6684...	255.0	[0..17]	[300..67]
ERG3_LEPMC - Delta(7)-sterol 5(6)-desaturase OS=Leptosphaeria maculans GN=ERG3 PE=3 SV=1	254.0	[0..9]	[298..62]
ERG3_CANAX - Delta(7)-sterol 5(6)-desaturase OS=Candida albicans GN=ERG3 PE=3 SV=1 gi\|238879059 - gi\|238879059\|gb\|EEQ42697.1\| C-5 sterol desaturase [Candida albicans WO-1]	254.0	[0..4]	[293..91]
orf19.767, orf19... - ERG3 CGDID:CAL0001905 Assembly 19, Contig19-10073 (37838, 38998) CDS, translated using codon table 1... gi\|68485022, gi\|... - gi\|68485022\|ref\|XP_713577.1\| hypothetical protein CaO19.767 [Candida albicans SC5314], gi\|68484947\|r...	253.0	[0..4]	[293..91]
ERG3_NEUCR - Probable Delta(7)-sterol 5(6)-desaturase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS ... ERG3_NEUCR - Probable C-5 sterol desaturase OS=Neurospora crassa GN=NCU06207 PE=3 SV=1	252.0	[0..9]	[299..51]
gi\|169776903 - gi\|169776903\|ref\|XP_001822917.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771654 - gi\|83771654\|dbj\|BAE61784.1\| unnamed protein product [Aspergillus oryzae]	251.0	[0..17]	[300..67]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYLLNYADQ YALDSIYNAV YPLARDNIVR QSISLFFLTW FGGMFLYLTF ASLSYQFVFD  60
   61 KSLMDHPKFL KNQVFMEVLT ALQNLPGMAL LTVPWFLAEL HGYSYLYDNI SDYG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKYFLCSLPL FVMFSDFGIY WAHRFLHHRY VYPRLHKLHH KWIICTPYAS HAFKSADGFL  60
   61 QSLPYHLFPF FFPLHKLTYL ALFTFVNFWS IMIHDGKYIS NNPIINGAAH HNGHHIYFNY 120
  121 NYGQFTTLFD RLGNSFRAPD EAWFDKDLRQ NEDVLRVELM EYEAIRNEVE GDDDREYIAN 180
  181 SAKKNH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.853872
Match:	PF04116.4
Description:	No description for PF04116.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits