YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC2D10.07c
Organism:	Schizosaccharomyces pombe
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC2D10.07c.

Description	E-value	Query Range	Subject Range
gi\|186684006, gi... - gi\|23125131\|ref\|ZP_00107078.1\| COG0681: Signal peptidase I [Nostoc punctiforme PCC 73102], gi\|186684...	166.0	[0..1]	[147..18]
gi\|83572735, gi\|... - gi\|83589821\|ref\|YP_429830.1\| signal peptidase I [Moorella thermoacetica ATCC 39073], gi\|83572735\|gb\|...	163.0	[0..3]	[147..18]
gi\|17230467, gi\|... - gi\|17230467\|ref\|NP_487015.1\| hypothetical protein alr2975 [Nostoc sp. PCC 7120], gi\|17132069\|dbj\|BAB... gi\|25327710 - pir\|\|AH2177 hypothetical protein alr2975 [imported] - Nostoc sp. (strain PCC 7120)	161.0	[0..2]	[147..19]
gi\|46119422, gi\|... - gi\|67923384\|ref\|ZP_00516864.1\| Signal peptidase I [Crocosphaera watsonii WH 8501], gi\|67854765\|gb\|EA...	161.0	[0..4]	[154..22]
gi\|75700879, gi\|... - gi\|75907154\|ref\|YP_321450.1\| thylakoidal processing peptidase [Anabaena variabilis ATCC 29413], gi\|7...	160.0	[0..2]	[147..19]
gi\|134052595, gi... - gi\|88947545\|ref\|ZP_01150520.1\| Peptidase S26A, signal peptidase I [Desulfotomaculum reducens MI-1], ...	155.0	[0..2]	[146..19]
gi\|88918906, gi\|... - gi\|88934448\|ref\|ZP_01140091.1\| Peptidase S26A, signal peptidase I [Geobacter uraniumreducens Rf4], g...	155.0	[0..2]	[152..19]
gi\|37522050, gi\|... - gi\|37522050\|ref\|NP_925427.1\| signal peptidase I [Gloeobacter violaceus PCC 7421], gi\|35213049\|dbj\|BA...	154.0	[0..1]	[147..27]
gi\|91709345, gi\|... - gi\|91775358\|ref\|YP_545114.1\| signal peptidase I [Methylobacillus flagellatus KT], gi\|91775214\|ref\|YP...	154.0	[0..4]	[151..38]
gi\|53762964, gi\|... - gi\|81299298\|ref\|YP_399506.1\| thylakoidal processing peptidase [Synechococcus elongatus PCC 7942], gi... gi\|56751041, gi\|... - gi\|56751041\|ref\|YP_171742.1\| signal peptidase I [Synechococcus elongatus PCC 6301], gi\|56686000\|dbj\|...	153.0	[0..4]	[147..25]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGMFRIPIA VVQIAAFVHQ IHEYLFQVQM TSGPSMMPTL NSGGEFVLLD KLHGRFARSC  60
   61 SVGDVVVSAK PSDSKQHVCK RIIGMPG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [88-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTIYVDPTSS NKKITIPLGH VWLAGDNIAH SLDSRNYGPV PMGLIKAKVI ARVWPHPHWM  60
   61 SNILNDIDVE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.7
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits