YRC Public Data Repository - Protein Structure Prediction

Protein:	gyp7
Organism:	Schizosaccharomyces pombe
Length:	743 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gyp7.

Description	E-value	Query Range	Subject Range
gi\|38103631, gi\|... - gi\|39944112\|ref\|XP_361593.1\| hypothetical protein MG04067.4 [Magnaporthe grisea 70-15], gb\|EAA50308....	577.0	[0..4]	[702..21]
gi\|42551225, gi\|... - gi\|46121625\|ref\|XP_385367.1\| hypothetical protein FG05191.1 [Gibberella zeae PH-1], gi\|42551225\|gb\|E...	553.0	[0..3]	[702..24]
gi\|16944459 - gi\|16944459\|emb\|CAC18154.2\| probable GTPase activating protein [Neurospora crassa]	546.0	[0..3]	[701..58]
gi\|85099240 - gi\|85099240\|ref\|XP_960741.1\| probable GTPase activating protein [MIPS] [Neurospora crassa OR74A] gi\|28922261, gi\|... - gi\|32404700\|ref\|XP_322963.1\| probable GTPase activating protein [MIPS] [Neurospora crassa], gi\|28922...	544.0	[0..3]	[701..65]
gi\|88178483, gi\|... - gi\|88178483\|gb\|EAQ85951.1\| hypothetical protein CHGG_07204 [Chaetomium globosum CBS 148.51], gi\|1161...	536.0	[0..9]	[722..1]
gi\|114190742, gi... - gi\|115386406\|ref\|XP_001209744.1\| GTPase-activating protein GYP7 [Aspergillus terreus NIH2624], gi\|11...	519.0	[0..3]	[702..18]
gi\|40738957, gi\|... - gi\|67540896\|ref\|XP_664222.1\| hypothetical protein AN6618.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	515.0	[0..3]	[702..18]
gi\|70984336, gi\|... - gi\|70984336\|ref\|XP_747683.1\| GTPase activating protein (Gyp7) [Aspergillus fumigatus Af293], gi\|6684... gi\|159122469 - gi\|159122469\|gb\|EDP47590.1\| GTPase activating protein (Gyp7), putative [Aspergillus fumigatus A1163]	512.0	[0..3]	[702..18]
gi\|83771769 - gi\|83771769\|dbj\|BAE61899.1\| unnamed protein product [Aspergillus oryzae] gi\|169777133 - gi\|169777133\|ref\|XP_001823032.1\| hypothetical protein [Aspergillus oryzae RIB40]	512.0	[0..3]	[702..18]
gi\|90297931, gi\|... - gi\|90297931\|gb\|EAS27562.1\| hypothetical protein CIMG_10167 [Coccidioides immitis RS], gi\|119173363\|r...	500.0	[0..4]	[701..19]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLESLDMP EMTEVEDDTV DIHIDNSKVA LLFSKSKVFV HPTSKMKDNI SGYLSLSKSK  60
   61 ALGNSSVAGS DILLSWVPDS FLKNRPRDLS V

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQNAETLSNG SIREWVEIPQ HLDYSFSVRL CSIYSIIFRP PRYGWNYGSI VINLRDSGES  60
   61 LPPLFFHDDE CISTIEYGKQ ITRDRFDPFD ESGNMFWGGT HLLMQLKKYA SLEQSSHESQ 120
  121 LYLVNPSPED TVAFQSVELQ KVISNN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [238-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLNSSSTPPT PRSSSSIFNP FRRALHDLSF TVLERFSRVT NYGKSEVDRL MEHKVTKSIL  60
   61 PHLPRELQVL LESKRVQKLT EEYDPARMFL ARWAEGIVEQ SESNNSQPVN NAGVWTDAQR 120
  121 EEDSSLGPFE LVYIEERVK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [377-743]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDDPLSVEQW NSMFNAHGKL QVDVHRVLGI IFHGGIQPSL RKEVWPFLLS VYPWDSTSEE  60
   61 RRVIYLSLQE EYCTLKRKWY EDIHKQFNDR WFIEQRNRIE KDVHRTDRQH EYFQIEDLPH 120
  121 PDPQSTFTGT NMNMEMMKDI LLTYNEYDTE LGYVQGMSDL LAPIYVTFND NALTFWGMVG 180
  181 LMKRLHFNFL RDQSGMHRQL DTLRLLIEFM DPELFAHLEK TDSSNLFCFF RMLLIYFKRE 240
  241 FDWEVLLKLW DVLFTNYLSY DYHIFVAYAI AERHREVLLN QTSAFDEVLK YFNELSGKLA 300
  301 LEPTLICAEQ CFYQFKNKLA LIDRKQMEET NSDEDGSKET DLPTIAPYLR NLLKTSQPQY 360
  361 TPSGKQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	2qfzA
Description:	No description for 2qfzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits